Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HTZ88_RS00020 Genome accession   NZ_CP054418
Coordinates   3269..4399 (+) Length   376 a.a.
NCBI ID   WP_135197220.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain 4010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS00005 (HTZ88_00005) dnaA 1..1347 (+) 1347 WP_014973539.1 chromosomal replication initiator protein DnaA -
  HTZ88_RS00010 (HTZ88_00010) dnaN 1541..2674 (+) 1134 WP_135197219.1 DNA polymerase III subunit beta -
  HTZ88_RS00015 (HTZ88_00015) yaaA 2832..3287 (+) 456 WP_014973541.1 S4 domain-containing protein YaaA -
  HTZ88_RS00020 (HTZ88_00020) recF 3269..4399 (+) 1131 WP_135197220.1 DNA replication/repair protein RecF Machinery gene
  HTZ88_RS00025 (HTZ88_00025) gyrB 4464..6473 (+) 2010 WP_014973543.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HTZ88_RS00030 (HTZ88_00030) gyrA 6565..9123 (+) 2559 WP_135197221.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42691.65 Da        Isoelectric Point: 6.5120

>NTDB_id=399643 HTZ88_RS00020 WP_135197220.1 3269..4399(+) (recF) [Leuconostoc carnosum strain 4010]
MELKSLKLTNYRNYADLALDFSEGINVFLGENAQGKTNLLESIYVLALARSHRTSSDKDLIRWQEKEATISGRVKKNISE
TPLSLHFSNKGKRARVNHLEQSKLSQYIGQLNVILFAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKDR
NAYLKRLQLKQTTDTMFLDVLTSQLVDVGAQVLLARQGFLEKLQQAAQPIHATISNQQETLTLKYQSAVEVNQGIDLETI
KSAFESALMRQRPREIMQGSTLVGPHRDDIQFIVNENDVAVFGSQGQQRTTALAIKLAEIDLMQQETGEYPVLLLDDVLS
ELDANRQTHLLLAIQDKVQTFITAPSLSDVARQLIHEPKVFHVQQGRIDVEEEAQS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=399643 HTZ88_RS00020 WP_135197220.1 3269..4399(+) (recF) [Leuconostoc carnosum strain 4010]
TTGGAACTCAAATCGTTAAAGCTCACAAATTATCGTAATTATGCTGATTTAGCGTTGGATTTTAGTGAGGGCATTAATGT
GTTTTTGGGTGAGAATGCGCAAGGAAAGACGAATTTGTTGGAGAGCATTTACGTTTTAGCTTTAGCGCGTTCGCATCGTA
CGAGTAGTGATAAAGATTTAATTCGTTGGCAAGAAAAAGAAGCAACCATTAGTGGTCGTGTAAAGAAAAATATTAGCGAA
ACGCCATTATCTTTGCATTTTTCTAACAAAGGCAAGCGCGCACGTGTTAACCATCTGGAACAATCCAAGTTATCTCAATA
TATTGGCCAATTGAATGTTATTTTATTTGCACCAGAAGACCTCGAGTTGGTTAAAGGGGCACCTAGTGTTCGCCGACGAT
TTATTGATATGGAATTTGGACAAATGAATCCATTGTATTTATACAACACAACACAGTATCGCCGTATATTAAAGGATCGC
AATGCCTACTTAAAACGATTGCAACTCAAGCAAACGACAGATACCATGTTTTTGGACGTCTTAACATCACAATTAGTTGA
TGTGGGCGCCCAAGTACTATTAGCGAGGCAGGGCTTTTTAGAAAAATTACAACAGGCAGCACAGCCGATTCATGCAACGA
TTTCTAATCAGCAAGAGACGCTAACACTCAAGTATCAAAGTGCTGTTGAAGTTAATCAAGGCATAGACTTAGAAACAATA
AAATCAGCCTTTGAATCAGCTTTAATGCGGCAGCGACCACGCGAAATTATGCAAGGGTCAACACTTGTTGGGCCACATCG
TGATGATATTCAATTCATTGTTAATGAGAATGATGTGGCAGTCTTTGGCTCGCAGGGCCAACAAAGAACAACAGCTTTAG
CCATTAAATTAGCTGAAATAGATTTGATGCAGCAAGAAACGGGAGAATATCCGGTTTTGCTACTAGATGATGTTTTAAGT
GAATTAGATGCTAATCGTCAGACACACTTACTGTTGGCGATTCAAGATAAAGTTCAAACATTTATAACGGCGCCATCATT
AAGTGATGTTGCACGGCAGTTGATTCATGAACCTAAAGTGTTTCACGTCCAGCAAGGTCGTATTGATGTCGAAGAAGAGG
CGCAATCATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

55.191

97.34

0.537
  recF Streptococcus pneumoniae R6

49.73

98.404

0.489