Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GI367_RS12520 Genome accession   NZ_CP045926
Coordinates   2602564..2603253 (-) Length   229 a.a.
NCBI ID   WP_200866785.1    Uniprot ID   -
Organism   Bacillus velezensis strain AL7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597564..2608253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI367_RS12485 (GI367_12485) fliW 2597654..2598085 (-) 432 WP_007614098.1 flagellar assembly protein FliW -
  GI367_RS12490 (GI367_12490) - 2598115..2598684 (-) 570 WP_007407476.1 DUF6470 family protein -
  GI367_RS12495 (GI367_12495) flgL 2598776..2599693 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  GI367_RS12500 (GI367_12500) flgK 2599705..2601222 (-) 1518 WP_029325804.1 flagellar hook-associated protein FlgK -
  GI367_RS12505 (GI367_12505) - 2601238..2601720 (-) 483 WP_007614101.1 flagellar protein FlgN -
  GI367_RS12510 (GI367_12510) flgM 2601735..2602001 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GI367_RS12515 (GI367_12515) - 2602071..2602490 (-) 420 WP_007614102.1 TIGR03826 family flagellar region protein -
  GI367_RS12520 (GI367_12520) comFC 2602564..2603253 (-) 690 WP_200866785.1 phosphoribosyltransferase family protein Machinery gene
  GI367_RS12525 (GI367_12525) - 2603259..2603543 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  GI367_RS12530 (GI367_12530) comFA 2603601..2604986 (-) 1386 WP_007614104.1 DEAD/DEAH box helicase Machinery gene
  GI367_RS12535 (GI367_12535) - 2605095..2605943 (-) 849 WP_007614105.1 DegV family protein -
  GI367_RS12540 (GI367_12540) degU 2606041..2606730 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GI367_RS12545 (GI367_12545) degS 2606807..2607970 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25213.83 Da        Isoelectric Point: 8.0779

>NTDB_id=399270 GI367_RS12520 WP_200866785.1 2602564..2603253(-) (comFC) [Bacillus velezensis strain AL7]
MNCLLCDSPITSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVASFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=399270 GI367_RS12520 WP_200866785.1 2602564..2603253(-) (comFC) [Bacillus velezensis strain AL7]
CTGAATTGTTTATTGTGTGACTCACCAATTACAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCGCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment