Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GI584_RS16875 Genome accession   NZ_CP045915
Coordinates   3525119..3526936 (-) Length   605 a.a.
NCBI ID   WP_153791946.1    Uniprot ID   -
Organism   Gracilibacillus salitolerans strain SCU50     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520119..3531936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI584_RS16850 (GI584_16850) - 3520641..3521447 (-) 807 WP_100359632.1 NAD kinase -
  GI584_RS16855 (GI584_16855) - 3521462..3522088 (-) 627 WP_100359631.1 GTP pyrophosphokinase family protein -
  GI584_RS16860 (GI584_16860) - 3522229..3522810 (+) 582 WP_100359630.1 CYTH domain-containing protein -
  GI584_RS16865 (GI584_16865) - 3522995..3523396 (+) 402 WP_100359629.1 globin -
  GI584_RS16870 (GI584_16870) - 3523393..3524286 (+) 894 WP_100359628.1 ClpXP adapter SpxH family protein -
  GI584_RS16875 (GI584_16875) pepF 3525119..3526936 (-) 1818 WP_153791946.1 oligoendopeptidase F Regulator
  GI584_RS16880 (GI584_16880) - 3526992..3528077 (-) 1086 WP_194842020.1 competence protein CoiA -
  GI584_RS16885 (GI584_16885) - 3528131..3529528 (-) 1398 WP_153791948.1 DHA2 family efflux MFS transporter permease subunit -
  GI584_RS16890 (GI584_16890) mecA 3529797..3530480 (-) 684 WP_100359624.1 adaptor protein MecA -
  GI584_RS16895 (GI584_16895) spxA 3530855..3531250 (-) 396 WP_018933337.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70357.82 Da        Isoelectric Point: 4.6097

>NTDB_id=399021 GI584_RS16875 WP_153791946.1 3525119..3526936(-) (pepF) [Gracilibacillus salitolerans strain SCU50]
MAKAQKSLPKRDEVPEELTWKLDDIFATDDEWDKQWEEVKALLPKFEEFQGKLNDGADKVYQLLQLQDEVSDRLSKLYTY
AHMRYDQDTTNSFYQAMNGKAENLITQASSKMSFITPEILKLDEQTLEQYLQDNEDLRLYKHTLDEINRQRPHVLTEKEE
VLLAEASEVTDNASQTFGMLNNADLTFPSVKDEQGNEVDLTHGRYINFLESKEQRVRHDAFKAMYDTYGSLKNTFASTIQ
GVVKKDNFYAKVRNYDSARQAALNKNNIPEKVYDNLVEAIHDGLPLLQRYVALRKKVLDIEELHMYDLYTPLVKDVDMSF
TYEQAQETVTEALKPLGEDYLQVMQRAFNERWIDVEENKGKRSGAYSSGAYSTNPYILMNWQDNLNNLFTLAHELGHSMH
SYYTHKHQPYRYGNYSIFVAEVASTCNEALLNNYLVEKTDDPKEKLFLLNHFLEGFRGTVFRQTMFAEFEHNIHVLAQDG
EALTADRLTELYYDLNKKYFGDDLVVDEEIGLEWARIPHFYYNYYVYQYATGYAAAQSLAAQILEEKEPAVERYLGYLQA
GSSDYPIEVLKKAGVDMTEKTPVTNALKVFEEKLDEMEKLLEQVK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=399021 GI584_RS16875 WP_153791946.1 3525119..3526936(-) (pepF) [Gracilibacillus salitolerans strain SCU50]
ATGGCAAAGGCTCAGAAATCACTACCGAAACGTGATGAAGTACCTGAAGAGTTAACATGGAAATTAGATGATATTTTTGC
GACAGATGATGAGTGGGACAAACAATGGGAAGAAGTAAAAGCGTTATTACCTAAATTTGAAGAATTTCAAGGAAAATTGA
ATGATGGCGCAGATAAAGTATATCAATTATTGCAATTACAAGATGAAGTATCGGATCGTCTGAGTAAACTCTATACATAC
GCGCATATGCGTTATGATCAGGATACGACAAACTCTTTCTATCAAGCAATGAATGGTAAGGCGGAGAATTTGATTACACA
AGCTTCCAGTAAAATGAGTTTTATAACGCCAGAAATCTTAAAATTGGACGAGCAGACGTTAGAACAATATTTACAGGATA
ATGAAGACCTACGTTTATATAAACATACACTAGATGAAATAAATCGCCAACGTCCACATGTTCTAACAGAGAAAGAAGAA
GTACTGTTAGCAGAAGCATCTGAAGTGACGGACAATGCGTCGCAAACATTTGGTATGCTTAACAATGCTGATTTAACCTT
TCCATCTGTTAAAGACGAGCAAGGTAATGAAGTGGATTTAACACATGGTCGCTATATTAATTTCCTTGAGTCAAAAGAGC
AGCGTGTTCGTCATGATGCATTTAAAGCGATGTATGACACATATGGCAGTTTAAAGAATACATTTGCTTCGACGATACAA
GGAGTGGTCAAAAAAGATAATTTCTATGCTAAAGTACGTAATTATGACTCAGCGAGACAAGCTGCTTTAAATAAAAATAA
TATTCCTGAGAAAGTGTATGATAATTTAGTTGAAGCAATCCATGATGGGTTGCCATTACTTCAGCGGTATGTAGCATTAA
GAAAGAAAGTATTAGATATAGAAGAATTGCATATGTATGACCTGTATACACCATTAGTAAAAGATGTCGATATGTCATTT
ACCTACGAGCAAGCACAAGAAACTGTGACAGAAGCACTAAAGCCTTTAGGTGAAGATTATTTACAAGTCATGCAAAGGGC
ATTCAATGAACGATGGATTGATGTCGAGGAGAACAAAGGGAAGCGTAGTGGTGCATATTCTTCTGGCGCATACAGTACGA
ACCCATACATTCTAATGAATTGGCAGGACAATTTAAATAACTTATTTACATTAGCCCATGAGTTAGGTCACTCGATGCAT
AGCTATTACACACATAAACATCAGCCATACCGTTATGGAAACTACTCCATTTTCGTAGCAGAAGTAGCTTCTACCTGTAA
TGAAGCGTTATTGAATAATTATTTAGTGGAGAAAACAGATGATCCAAAAGAAAAATTATTCTTACTGAATCACTTTTTGG
AAGGATTCCGTGGTACTGTATTCAGACAAACCATGTTTGCAGAATTTGAGCATAATATTCATGTATTGGCACAGGATGGG
GAAGCATTAACTGCAGATCGCTTAACTGAACTGTACTATGATTTGAATAAAAAGTATTTTGGTGATGACCTGGTGGTAGA
TGAAGAAATCGGATTAGAATGGGCGCGAATCCCACATTTCTACTACAATTATTATGTCTATCAATATGCGACAGGCTATG
CAGCAGCACAATCATTAGCCGCGCAAATTTTAGAAGAAAAAGAACCAGCAGTAGAACGTTATCTTGGCTACTTACAAGCA
GGAAGCAGCGACTATCCTATCGAAGTATTGAAAAAAGCAGGTGTTGATATGACCGAAAAAACTCCTGTTACCAATGCATT
AAAAGTATTCGAAGAAAAGCTTGATGAAATGGAGAAATTATTAGAGCAAGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(209-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.747

98.017

0.488

Multiple sequence alignment