Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HPE50_RS04300 | Genome accession | NZ_CP054353 |
| Coordinates | 911387..911827 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360914.1 | Uniprot ID | A0A0H2YVZ3 |
| Organism | Escherichia coli strain SCU-172 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 906387..916827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE50_RS04280 (HPE50_04270) | coaE | 906877..907497 (-) | 621 | WP_001269517.1 | dephospho-CoA kinase | - |
| HPE50_RS26995 | - | 907522..907566 (+) | 45 | WP_120795372.1 | protein YacM | - |
| HPE50_RS04285 (HPE50_04275) | guaC | 907722..908765 (+) | 1044 | WP_001217333.1 | GMP reductase | - |
| HPE50_RS04290 (HPE50_04280) | hofC | 908800..910002 (-) | 1203 | WP_000157242.1 | protein transport protein HofC | - |
| HPE50_RS04295 (HPE50_04285) | pilB | 909992..911377 (-) | 1386 | WP_001570936.1 | type II secretion system protein GspE | Machinery gene |
| HPE50_RS04300 (HPE50_04290) | pilA | 911387..911827 (-) | 441 | WP_000360914.1 | prepilin peptidase-dependent pilin | Machinery gene |
| HPE50_RS04305 (HPE50_04295) | nadC | 912030..912923 (-) | 894 | WP_001135178.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HPE50_RS04310 (HPE50_04300) | ampD | 913011..913562 (+) | 552 | WP_000923703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| HPE50_RS04315 (HPE50_04305) | ampE | 913559..914413 (+) | 855 | WP_000171986.1 | beta-lactamase regulator AmpE | - |
| HPE50_RS04320 (HPE50_04310) | aroP | 914456..915829 (-) | 1374 | WP_001330227.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15620.77 Da Isoelectric Point: 4.5237
>NTDB_id=398946 HPE50_RS04300 WP_000360914.1 911387..911827(-) (pilA) [Escherichia coli strain SCU-172]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=398946 HPE50_RS04300 WP_000360914.1 911387..911827(-) (pilA) [Escherichia coli strain SCU-172]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCTTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCTTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |