Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HTZ78_RS08710 Genome accession   NZ_CP054306
Coordinates   1847444..1848064 (-) Length   206 a.a.
NCBI ID   WP_212722107.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842444..1853064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS08700 (HTZ78_08690) - 1844439..1846556 (+) 2118 WP_212721700.1 TIGR00300 family protein -
  HTZ78_RS08705 (HTZ78_08695) - 1846762..1847319 (+) 558 WP_194014973.1 hypothetical protein -
  HTZ78_RS08710 (HTZ78_08700) recR 1847444..1848064 (-) 621 WP_212722107.1 recombination mediator RecR Machinery gene
  HTZ78_RS08715 (HTZ78_08705) - 1848257..1848505 (+) 249 WP_194014971.1 DUF3146 family protein -
  HTZ78_RS08720 (HTZ78_08710) bfr 1848695..1849165 (+) 471 WP_194014969.1 bacterioferritin -
  HTZ78_RS08725 (HTZ78_08715) - 1849307..1849660 (-) 354 WP_212721702.1 hypothetical protein -
  HTZ78_RS08730 (HTZ78_08720) murB 1849682..1850635 (-) 954 WP_212721711.1 UDP-N-acetylmuramate dehydrogenase -
  HTZ78_RS08735 (HTZ78_08725) murC 1850707..1852224 (-) 1518 WP_212721713.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22556.29 Da        Isoelectric Point: 7.3017

>NTDB_id=398812 HTZ78_RS08710 WP_212722107.1 1847444..1848064(-) (recR) [Synechocystis sp. PCC 7338]
MSLAPGGLGAIYTPPLARLIEQLQRLPSVGPKTAQRLALHLLKRPDAEVENLAQAILDAKKRVGQCRVCFHLSAEPVCDI
CRHPQRDNSVICVVSDPRDVIALEKTREFRGKYHVLGGVISPMDGIGPEQLTIQPLLHRVSQPEIAEVILAISPSVEGET
TTLYLGKLLQPFTKVTRIAFGLPMGGDLEYADEVTLARALEGRREL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=398812 HTZ78_RS08710 WP_212722107.1 1847444..1848064(-) (recR) [Synechocystis sp. PCC 7338]
ATTTCCCTCGCACCAGGAGGTCTTGGCGCCATTTACACTCCTCCCCTAGCCCGTCTCATTGAACAATTGCAACGGCTTCC
CAGTGTGGGGCCTAAAACGGCCCAACGTCTTGCCCTACACCTCCTCAAGCGCCCCGATGCGGAGGTAGAAAACTTAGCCC
AAGCCATTCTCGACGCTAAAAAACGGGTGGGGCAGTGCCGGGTGTGCTTCCATTTATCCGCTGAGCCCGTCTGTGACATT
TGTCGCCATCCCCAACGGGATAACAGCGTTATCTGTGTGGTCAGTGATCCCAGGGATGTGATTGCGTTGGAAAAAACCAG
GGAATTTCGGGGCAAGTACCATGTGTTAGGCGGGGTAATTTCCCCCATGGACGGCATCGGCCCAGAGCAGTTGACCATTC
AACCCCTATTACATCGGGTTAGTCAGCCGGAAATTGCCGAGGTGATTTTAGCCATTAGTCCCAGCGTGGAAGGGGAAACC
ACCACTTTATATCTCGGTAAATTACTCCAACCCTTTACCAAAGTTACCCGCATTGCCTTTGGTTTACCCATGGGGGGAGA
TTTGGAATATGCCGATGAGGTTACCCTGGCTCGGGCCCTAGAAGGACGACGGGAACTTTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(89-179)

RecR protein (RecR_ZnF)

(48-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

94.175

0.51
  recR Bacillus subtilis subsp. subtilis str. 168

53.571

95.146

0.51
  recR Streptococcus pneumoniae R6

44.67

95.631

0.427