Detailed information NTG0398790

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: HTZ78_RS02100
• Genome accession: NZ_CP054306
• Coordinates: 433076..434290 (-)
• Length: 404 a.a.
• NCBI ID: WP_212718538.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 7338
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 428076..439290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HTZ78_RS02075 (HTZ78_02075)	-	428186..428422 (+)	237	WP_190598525.1	DUF3134 domain-containing protein	-
HTZ78_RS02080 (HTZ78_02080)	-	428682..429566 (+)	885	WP_212718522.1	S-methyl-5'-thioadenosine phosphorylase	-
HTZ78_RS02085 (HTZ78_02085)	-	429710..431035 (+)	1326	WP_212718523.1	aminopeptidase P N-terminal domain-containing protein	-
HTZ78_RS02090 (HTZ78_02090)	-	431247..431855 (-)	609	WP_028948479.1	ATP-dependent Clp protease proteolytic subunit	-
HTZ78_RS02095 (HTZ78_02095)	-	431981..432658 (-)	678	WP_212718531.1	ATP-dependent Clp protease proteolytic subunit	-
HTZ78_RS02100 (HTZ78_02100)	pilC	433076..434290 (-)	1215	WP_212718538.1	type II secretion system F family protein	Machinery gene
HTZ78_RS02105 (HTZ78_02105)	pilT	434397..435506 (-)	1110	WP_212718540.1	type IV pilus twitching motility protein PilT	Machinery gene
HTZ78_RS02110 (HTZ78_02110)	-	435883..437286 (+)	1404	WP_212718542.1	efflux RND transporter periplasmic adaptor subunit	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43858.72 Da
• Isoelectric Point: 4.9730

>NTDB_id=398790 HTZ78_RS02100 WP_212718538.1 433076..434290(-) (pilC) [Synechocystis sp. PCC 7338]
MATFVAQVKDRKGKTTKAKVEAMSPEQARTILRQQYAAIGTIKPAGGEINLEFLENLLNNVSVKDKAVFSRQFSVMINAG
VAIVRCLGVLSEQCPNPKLKRALTGISGDVQQGTNLSEAMAKYPDCFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDMAR
LQNQIKSAMAYPVAVGFLAVVAFLGMTIFLIPVFAGIFDDLGGELPALTEFMVGLSNFLRSPMAIIPVIVIVVAVFLFKK
YYGTYTGRRQVDAVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVCNTVPNKIISDAISGAISEIQQGGMM
SLALQQSKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVGTILLSMYLPMFAIF
DQLG

Nucleotide

• Length: 1215 bp

>NTDB_id=398790 HTZ78_RS02100 WP_212718538.1 433076..434290(-) (pilC) [Synechocystis sp. PCC 7338]
ATGGCCACGTTTGTCGCTCAAGTTAAAGATCGTAAGGGCAAAACCACCAAAGCCAAGGTGGAAGCCATGAGCCCCGAACA
GGCTCGCACCATCCTCCGCCAACAATACGCGGCGATCGGTACTATTAAGCCAGCCGGCGGGGAAATCAACCTCGAGTTTC
TCGAGAATTTACTTAACAACGTTAGCGTTAAGGACAAAGCGGTTTTCTCCCGTCAATTTTCCGTCATGATCAATGCCGGC
GTGGCGATCGTTCGTTGTTTGGGCGTGCTGTCGGAGCAATGTCCTAACCCCAAACTGAAACGGGCATTAACTGGTATTAG
TGGCGATGTGCAACAGGGGACCAACCTTTCCGAAGCCATGGCCAAGTATCCCGACTGTTTTGACGATCTCTACGTCAGCA
TGGTGGAAGCAGGGGAAACTGGGGGGGTTTTGGATGAAGTGCTCAATCGGCTTTCCAAACTCCTGGAAGACATGGCCCGT
TTGCAAAACCAGATTAAGTCCGCCATGGCTTACCCGGTGGCGGTGGGCTTCCTGGCAGTGGTGGCTTTTCTGGGTATGAC
TATATTTCTCATCCCTGTCTTTGCAGGAATTTTTGATGACCTAGGGGGGGAACTGCCTGCTTTAACCGAATTTATGGTTG
GCCTAAGTAACTTTTTAAGAAGTCCCATGGCCATTATTCCTGTAATTGTCATTGTGGTTGCTGTTTTTCTGTTCAAAAAA
TATTACGGAACCTATACCGGGCGGCGCCAGGTGGATGCGGTGATGTTGAAACTGCCTCTGTTTGGCCCCTTGAATGAAAA
AACCGCCGTAGCTAGATTTTGCCGCGTGTTTGGTACTCTTACCCGTTCGGGGGTTCCCATCATTCAATCTTTGGAAATTG
TTTGTAACACTGTGCCCAATAAAATAATTTCCGATGCGATCTCCGGAGCAATTAGTGAAATCCAACAGGGGGGGATGATG
AGTTTGGCTCTGCAACAAAGTAAAGTCTTTCCCTCTTTGGCCATTCAAATGATTAGTATCGGGGAAGAAACAGGGGAACT
GGATGCCATGATGATGAAAGTGGCGGACTTCTATGAGGATGAGGTAGAGCAAACGGTTAAAGCGCTGACCAGTATCATCG
AGCCAGCCATGATGGTCTTGATTGCCGGTATGGTCGGTACCATTTTGCTTTCCATGTATCTACCCATGTTTGCCATCTTT
GATCAGTTGGGTTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	40.64	100	0.408