Detailed information NTG0039873

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: INV104_RS11260
• Genome accession: NC_017591
• Coordinates: 2124673..2125770 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266660.1
• Uniprot ID: Q97N44
• Organism: Streptococcus pneumoniae INV104
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2119673..2130770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INV104_RS11235 (INV104_19230)	pgsA	2120194..2120739 (-)	546	WP_000712129.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
INV104_RS11240 (INV104_19240)	rodZ	2120750..2121571 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
INV104_RS11245 (INV104_19250)	yfmH	2121613..2122896 (-)	1284	WP_000170229.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
INV104_RS11250 (INV104_19260)	yfmF	2122893..2124143 (-)	1251	WP_000424260.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
INV104_RS11255 (INV104_19270)	-	2124302..2124670 (+)	369	WP_000455898.1	RNA-binding S4 domain-containing protein	-
INV104_RS11260 (INV104_19280)	recF	2124673..2125770 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
INV104_RS11265 (INV104_19290)	guaB	2125821..2127299 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
INV104_RS11270 (INV104_19300)	trpS	2127452..2128477 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
INV104_RS11275 (INV104_19310)	-	2128683..2130305 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41900.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=39873 INV104_RS11260 WP_000266660.1 2124673..2125770(+) (recF) [Streptococcus pneumoniae INV104]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=39873 INV104_RS11260 WP_000266660.1 2124673..2125770(+) (recF) [Streptococcus pneumoniae INV104]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q97N44

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46