Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GDS87_RS15495 Genome accession   NZ_CP045835
Coordinates   3148695..3150386 (-) Length   563 a.a.
NCBI ID   WP_369593162.1    Uniprot ID   -
Organism   Lysinibacillus pakistanensis strain LZH-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3143695..3155386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDS87_RS15475 (GDS87_15110) - 3143756..3144484 (-) 729 WP_369593161.1 glycerophosphodiester phosphodiesterase -
  GDS87_RS15480 (GDS87_15115) - 3144477..3146048 (-) 1572 WP_283868559.1 DUF342 domain-containing protein -
  GDS87_RS15485 (GDS87_15120) spo0A 3146485..3147276 (-) 792 WP_079561794.1 sporulation transcription factor Spo0A -
  GDS87_RS15490 (GDS87_15125) - 3147626..3148573 (-) 948 WP_283868583.1 SpoIVB peptidase S55 domain-containing protein -
  GDS87_RS15495 (GDS87_15130) recN 3148695..3150386 (-) 1692 WP_369593162.1 DNA repair protein RecN Machinery gene
  GDS87_RS15500 (GDS87_15135) argR 3150423..3150872 (-) 450 WP_283868585.1 transcriptional regulator AhrC/ArgR -
  GDS87_RS15505 (GDS87_15140) - 3150973..3151791 (-) 819 WP_369593163.1 TlyA family RNA methyltransferase -
  GDS87_RS15510 (GDS87_15145) dxs 3151791..3153692 (-) 1902 WP_369593164.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GDS87_RS15515 (GDS87_15150) - 3153964..3154845 (-) 882 WP_054771651.1 polyprenyl synthetase family protein -
  GDS87_RS15520 (GDS87_15155) xseB 3154849..3155082 (-) 234 WP_054771650.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63524.43 Da        Isoelectric Point: 4.9852

>NTDB_id=398541 GDS87_RS15495 WP_369593162.1 3148695..3150386(-) (recN) [Lysinibacillus pakistanensis strain LZH-9]
MLKELSIRNFAIIEDLTVSFSNGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGARKAELGGLFQISSSLHPVHKK
LEEAGIEIEEDTIILRRDLHDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIYLLDHFAEEQLAPIQ
EVYSSQYEEYRSLKRELASISIDEQLMAQRIDLYQFQMKELEDAKLRLGEEDELLDERRRLMNFNKIFERSNEAYEAIQG
ESKGLDWIGNAMGALEDAAKVDDQFKEASEAVTTAFYALQDAAHQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
IEEILAYYEKIKTELNELLNRDEILQVKERKVLEMESALQELAVQLTAIRKNAAHHLSEAIMAELRELHMEKAKFIVNFD
ELSFFDANGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISINSQVLCISHLPQVAAMADHHYFIKKEVNHDRTFTSLLEIDTKARIEEVSRMMSGAEITDLTLQHATELLKMANARKK
QMK

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=398541 GDS87_RS15495 WP_369593162.1 3148695..3150386(-) (recN) [Lysinibacillus pakistanensis strain LZH-9]
GTGTTAAAAGAGCTTAGTATTCGAAACTTTGCCATTATAGAGGATTTGACAGTTAGCTTTTCAAATGGTTTAACTGTATT
AACAGGAGAAACAGGTGCTGGAAAATCAATTATCATTGATGCTGTCCATTTACTTGCAGGCGGTAGAGGAAACTCCGAAT
TCATTCGTCATGGAGCAAGAAAGGCTGAATTAGGAGGTTTATTTCAAATCTCCAGTTCTTTGCATCCTGTGCATAAAAAG
CTTGAAGAAGCAGGCATTGAGATTGAAGAAGATACCATTATTTTACGCCGTGATTTACATGATACTGGCAAAAGTATTTG
TCGAGTAAACGGAAAACTGGTGCCATTATCTGTACTCCGTGATATTGGCGCTAGCTTAATCGATATTCATGGTCAACATG
AAAATCAGGAACTGATGGACGAAAAACAGCACATTTATTTGCTGGACCACTTTGCAGAGGAACAACTTGCTCCAATACAG
GAAGTATACAGTTCTCAGTATGAAGAATATCGATCGCTAAAAAGAGAATTGGCTTCTATTTCAATTGATGAGCAGTTAAT
GGCGCAACGTATTGATTTATATCAGTTCCAAATGAAAGAGCTAGAGGATGCCAAATTAAGGTTAGGTGAGGAAGATGAGC
TTCTTGACGAACGTCGCCGTTTGATGAATTTCAATAAGATTTTTGAGCGTTCTAATGAAGCCTATGAAGCAATTCAAGGG
GAATCGAAAGGTCTTGACTGGATAGGCAATGCAATGGGGGCATTAGAGGATGCTGCAAAAGTTGACGATCAATTTAAAGA
AGCCTCGGAAGCTGTAACCACAGCATTCTATGCATTACAGGATGCTGCACACCAGGTTAAAAATGTATTAGATGAATTAG
AGTTTGACCCAGCCCGATTAAATGAAGTCGAGCAGCGTTTAGCACTATTCCAAAATTTAAAGCGTAAATATGGCTCAACA
ATTGAAGAGATTTTAGCGTATTACGAAAAAATTAAAACTGAGCTGAATGAACTCTTAAATCGCGATGAAATTTTACAGGT
TAAAGAGCGAAAAGTACTAGAAATGGAATCAGCACTACAAGAGCTGGCTGTACAATTAACTGCTATTCGAAAAAATGCTG
CACATCATTTAAGTGAGGCTATTATGGCTGAACTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTTAATTTTGAT
GAATTATCATTTTTTGATGCCAACGGGAAAGACCAGGTTATTTTTTATATTTCCACGAATGTGGGCGAGCCGCCAAAATC
ATTACCTAAAATTGCATCTGGTGGTGAATTGTCACGTATGATGCTTGCGTTAAAGACCATTTTCTCATCTTCAAACGGCA
TCACCTCAATTATTTTTGACGAGGTAGATACCGGTGTAAGTGGTCGAGTTGCACAGGCAATTGCTGAAAAAATTGCTGCA
ATCTCTATCAACTCTCAGGTTTTATGTATTTCACATTTACCACAAGTCGCTGCGATGGCTGATCATCATTATTTTATCAA
AAAAGAAGTGAACCATGATCGAACATTTACTTCATTGCTTGAAATTGATACAAAAGCTCGCATTGAAGAAGTAAGTCGGA
TGATGTCTGGTGCAGAAATTACTGACTTAACTTTACAGCATGCAACAGAGCTATTAAAAATGGCAAATGCCCGAAAAAAA
CAAATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.993

100

0.533

Multiple sequence alignment