Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GIJ09_RS13240 Genome accession   NZ_CP045832
Coordinates   1761964..1762569 (+) Length   201 a.a.
NCBI ID   WP_153707890.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1756964..1767569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS09525 (GIJ09_09525) metG 1756984..1759038 (+) 2055 WP_149032534.1 methionine--tRNA ligase -
  GIJ09_RS09530 (GIJ09_09530) - 1759113..1759427 (-) 315 Protein_1778 NAD(P)-dependent oxidoreductase -
  GIJ09_RS12365 - 1759425..1759768 (+) 344 Protein_1779 pilin -
  GIJ09_RS12370 - 1759808..1760161 (+) 354 Protein_1780 pilin -
  GIJ09_RS09540 (GIJ09_09540) - 1760598..1760978 (+) 381 Protein_1781 pilin -
  GIJ09_RS09545 (GIJ09_09545) - 1760978..1761331 (+) 354 Protein_1782 pilin -
  GIJ09_RS09550 (GIJ09_09550) - 1761313..1761636 (+) 324 Protein_1783 pilin -
  GIJ09_RS09555 (GIJ09_09555) - 1761663..1761967 (+) 305 Protein_1784 pilin -
  GIJ09_RS13240 (GIJ09_09560) pilE 1761964..1762569 (+) 606 WP_153707890.1 pilin Machinery gene
  GIJ09_RS09565 (GIJ09_09565) thiC 1763055..1764956 (-) 1902 WP_149032452.1 phosphomethylpyrimidine synthase ThiC -
  GIJ09_RS09575 (GIJ09_09575) - 1765554..1766429 (+) 876 WP_003686971.1 NUDIX hydrolase -
  GIJ09_RS09580 (GIJ09_09580) - 1766438..1767379 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21790.53 Da        Isoelectric Point: 10.1365

>NTDB_id=398516 GIJ09_RS13240 WP_153707890.1 1761964..1762569(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
MNSSNVNKEIQGKKLSLWAKRQDGSVKWFCGQPVKRDAGNAGKADDVTKDDAGKKIDTKHLPSTCRDKSTAVCTKHHAPI
SNTSKKSAVAGYYLNHGKWPKNNDEAGVASSDKIKGKYVQKVEVAKGVVTAQMASTGVNKEIKGKKLSLWAKRENGSVKW
FCGQPVTRTGDNDDTVADAKDGKEIDTKHLPSTCRDESTAT

Nucleotide


Download         Length: 606 bp        

>NTDB_id=398516 GIJ09_RS13240 WP_153707890.1 1761964..1762569(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGAATTCAAGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGACGCCGGCAACGCCGGCAAAGCCGACGACGTCACCAAAGACGACGCCGGCA
AAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCAACTGCCGTTTGCACGAAACACCACGCGCCGATT
TCAAACACTTCCAAAAAATCAGCCGTTGCCGGGTATTACCTGAATCACGGCAAATGGCCGAAAAACAACGACGAGGCCGG
CGTGGCATCCTCCGACAAAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCCAAATGG
CTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGG
TTCTGCGGACAGCCGGTTACGCGCACCGGCGACAACGACGACACCGTTGCCGACGCCAAAGACGGCAAAGAAATCGACAC
CAAGCACCTGCCGTCAACCTGCCGCGATGAATCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(84-195)

Pilin (bacterial filament) (Pilin)

(1-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

82.906

58.209

0.483
  pilE Neisseria gonorrhoeae MS11

70.229

65.174

0.458

Multiple sequence alignment