Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GIJ09_RS07735 Genome accession   NZ_CP045832
Coordinates   1434316..1434738 (+) Length   140 a.a.
NCBI ID   WP_228547126.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429316..1439738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS07710 (GIJ09_07710) recO 1429990..1430733 (-) 744 WP_003695555.1 DNA repair protein RecO -
  GIJ09_RS07715 (GIJ09_07715) pheA 1430770..1431897 (-) 1128 WP_010360698.1 prephenate dehydratase -
  GIJ09_RS07720 (GIJ09_07720) - 1431936..1433164 (-) 1229 Protein_1436 multidrug effflux MFS transporter -
  GIJ09_RS07730 (GIJ09_07730) - 1433280..1434155 (-) 876 WP_003693582.1 DMT family transporter -
  GIJ09_RS07735 (GIJ09_07735) pilE 1434316..1434738 (+) 423 WP_228547126.1 pilin Machinery gene
  GIJ09_RS07740 (GIJ09_07740) - 1435399..1436085 (+) 687 WP_228547127.1 opacity family porin -
  GIJ09_RS12285 - 1436099..1436314 (+) 216 WP_169300636.1 hypothetical protein -
  GIJ09_RS07745 (GIJ09_07745) - 1436368..1437180 (-) 813 WP_003701591.1 carbon-nitrogen hydrolase family protein -
  GIJ09_RS07750 (GIJ09_07750) - 1437265..1438137 (+) 873 WP_003693577.1 prephenate dehydrogenase -
  GIJ09_RS07755 (GIJ09_07755) - 1438195..1439349 (-) 1155 WP_010358927.1 NnrS family protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15344.02 Da        Isoelectric Point: 7.8505

>NTDB_id=398497 GIJ09_RS07735 WP_228547126.1 1434316..1434738(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
MFQGPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPENNTSAGVASASTIKGKYVKQVEVKNGVVTATMASSNVNKEIK
DKRLSLWAKRENGSVKWFCGRPVQRNANDAAKDDVTAVTDNNNIETKHLPSTCRDESTAT

Nucleotide


Download         Length: 423 bp        

>NTDB_id=398497 GIJ09_RS07735 WP_228547126.1 1434316..1434738(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
TTGTTCCAAGGTCCGGACTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCGCTTCAACAATCAAAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTCAGCGCAACGC
CAACGACGCCGCCAAAGACGACGTCACCGCCGTCACCGACAACAACAACATCGAAACCAAGCACCTGCCGTCAACCTGCC
GCGATGAATCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.803

90.714

0.679
  pilE Neisseria gonorrhoeae MS11

73.81

90

0.664

Multiple sequence alignment