Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HR071_RS06945 Genome accession   NZ_CP054232
Coordinates   1440430..1441167 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EcPF7     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435430..1446167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR071_RS06930 (HR071_06925) clpC 1435884..1438457 (-) 2574 WP_059319506.1 ATP-dependent chaperone ClpB Regulator
  HR071_RS06935 (HR071_06930) yfiH 1438587..1439318 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  HR071_RS06940 (HR071_06935) rluD 1439315..1440295 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HR071_RS06945 (HR071_06940) comL 1440430..1441167 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  HR071_RS06950 (HR071_06945) insG 1441217..1442563 (-) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  HR071_RS06955 (HR071_06950) raiA 1442876..1443217 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  HR071_RS06960 (HR071_06955) pheL 1443321..1443368 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  HR071_RS06965 (HR071_06960) pheA 1443467..1444627 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  HR071_RS06970 (HR071_06965) tyrA 1444670..1445791 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=398480 HR071_RS06945 WP_000197686.1 1440430..1441167(+) (comL) [Escherichia coli strain EcPF7]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=398480 HR071_RS06945 WP_000197686.1 1440430..1441167(+) (comL) [Escherichia coli strain EcPF7]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment