Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   INV104_RS08190 Genome accession   NC_017591
Coordinates   1549305..1549901 (-) Length   198 a.a.
NCBI ID   WP_000966745.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1544305..1554901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INV104_RS08170 (INV104_14190) - 1545236..1545940 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  INV104_RS08175 (INV104_14200) - 1546031..1546642 (-) 612 WP_000857981.1 NUDIX hydrolase N-terminal domain-containing protein -
  INV104_RS08180 (INV104_14210) - 1546629..1548002 (-) 1374 WP_000778745.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  INV104_RS08185 (INV104_14220) - 1548086..1549129 (-) 1044 WP_000814647.1 D-alanine--D-alanine ligase -
  INV104_RS08190 (INV104_14230) recR 1549305..1549901 (-) 597 WP_000966745.1 recombination mediator RecR Machinery gene
  INV104_RS08195 (INV104_14240) pbp2b 1549912..1551969 (-) 2058 WP_001829432.1 penicillin-binding protein 2B -
  INV104_RS08200 (INV104_14250) - 1552169..1553020 (+) 852 WP_000360334.1 MurR/RpiR family transcriptional regulator -
  INV104_RS08205 (INV104_14260) - 1553036..1553920 (-) 885 WP_000222983.1 ROK family protein -
  INV104_RS08210 (INV104_14270) - 1553938..1554855 (-) 918 WP_001281502.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21718.88 Da        Isoelectric Point: 4.5622

>NTDB_id=39830 INV104_RS08190 WP_000966745.1 1549305..1549901(-) (recR) [Streptococcus pneumoniae INV104]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVATMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=39830 INV104_RS08190 WP_000966745.1 1549305..1549901(-) (recR) [Streptococcus pneumoniae INV104]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACCGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAACCATGGAAAATATCCAAGAATACCATGGCCTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAAGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

61.616

100

0.616
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment