Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GII78_RS13280 | Genome accession | NZ_CP045824 |
| Coordinates | 2549898..2550233 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain MB8_B10 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2544898..2555233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GII78_RS13260 (GII78_13260) | gcvT | 2545491..2546579 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GII78_RS13265 (GII78_13265) | hepAA | 2547020..2548693 (+) | 1674 | WP_029726726.1 | SNF2-related protein | - |
| GII78_RS13270 (GII78_13270) | yqhG | 2548714..2549508 (+) | 795 | WP_015714249.1 | YqhG family protein | - |
| GII78_RS13275 (GII78_13275) | sinI | 2549691..2549864 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| GII78_RS13280 (GII78_13280) | sinR | 2549898..2550233 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| GII78_RS13285 (GII78_13285) | tasA | 2550326..2551111 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| GII78_RS13290 (GII78_13290) | sipW | 2551175..2551747 (-) | 573 | WP_072692741.1 | signal peptidase I SipW | - |
| GII78_RS13295 (GII78_13295) | tapA | 2551731..2552492 (-) | 762 | WP_029726724.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GII78_RS13300 (GII78_13300) | yqzG | 2552764..2553090 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| GII78_RS13305 (GII78_13305) | spoIITA | 2553132..2553311 (-) | 180 | WP_029726723.1 | YqzE family protein | - |
| GII78_RS13310 (GII78_13310) | comGG | 2553383..2553757 (-) | 375 | WP_029726722.1 | ComG operon protein ComGG | Machinery gene |
| GII78_RS13315 (GII78_13315) | comGF | 2553758..2554141 (-) | 384 | WP_029726721.1 | ComG operon protein ComGF | Machinery gene |
| GII78_RS13320 (GII78_13320) | comGE | 2554167..2554514 (-) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| GII78_RS13325 (GII78_13325) | comGD | 2554498..2554929 (-) | 432 | WP_029726720.1 | comG operon protein ComGD | Machinery gene |
| GII78_RS13330 (GII78_13330) | comGC | 2554919..2555215 (-) | 297 | WP_029726719.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=398225 GII78_RS13280 WP_003226345.1 2549898..2550233(+) (sinR) [Bacillus subtilis strain MB8_B10]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=398225 GII78_RS13280 WP_003226345.1 2549898..2550233(+) (sinR) [Bacillus subtilis strain MB8_B10]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |