Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII79_RS17090 Genome accession   NZ_CP045823
Coordinates   3255557..3256201 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250557..3261201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII79_RS17055 (GII79_17055) mrpB 3251747..3252178 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  GII79_RS17060 (GII79_17060) mrpC 3252178..3252519 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII79_RS17065 (GII79_17065) mrpD 3252512..3253993 (+) 1482 WP_038429539.1 Na+/H+ antiporter subunit D -
  GII79_RS17070 (GII79_17070) mrpE 3253999..3254475 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII79_RS17075 (GII79_17075) mrpF 3254475..3254759 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII79_RS17080 (GII79_17080) mnhG 3254743..3255117 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  GII79_RS17085 (GII79_17085) yuxO 3255158..3255538 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GII79_RS17090 (GII79_17090) comA 3255557..3256201 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII79_RS17095 (GII79_17095) comP 3256282..3258579 (-) 2298 WP_153912412.1 histidine kinase Regulator
  GII79_RS17100 (GII79_17100) comX 3258587..3258748 (-) 162 WP_049140565.1 competence pheromone ComX -
  GII79_RS17105 (GII79_17105) - 3258763..3259623 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  GII79_RS17110 (GII79_17110) degQ 3259808..3259948 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII79_RS17115 (GII79_17115) - 3260170..3260295 (+) 126 WP_003228793.1 hypothetical protein -
  GII79_RS17120 (GII79_17120) - 3260411..3260779 (+) 369 WP_119899729.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=398167 GII79_RS17090 WP_003220716.1 3255557..3256201(-) (comA) [Bacillus subtilis strain MB8_B1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=398167 GII79_RS17090 WP_003220716.1 3255557..3256201(-) (comA) [Bacillus subtilis strain MB8_B1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment