Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII81_RS17320 Genome accession   NZ_CP045820
Coordinates   3298280..3298924 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3293280..3303924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII81_RS17285 (GII81_17285) mrpB 3294470..3294901 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  GII81_RS17290 (GII81_17290) mrpC 3294901..3295242 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII81_RS17295 (GII81_17295) mrpD 3295235..3296716 (+) 1482 WP_038429539.1 Na+/H+ antiporter subunit D -
  GII81_RS17300 (GII81_17300) mrpE 3296722..3297198 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII81_RS17305 (GII81_17305) mrpF 3297198..3297482 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII81_RS17310 (GII81_17310) mnhG 3297466..3297840 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  GII81_RS17315 (GII81_17315) yuxO 3297881..3298261 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GII81_RS17320 (GII81_17320) comA 3298280..3298924 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII81_RS17325 (GII81_17325) comP 3299005..3301302 (-) 2298 WP_153912412.1 histidine kinase Regulator
  GII81_RS17330 (GII81_17330) comX 3301310..3301471 (-) 162 WP_049140565.1 competence pheromone ComX -
  GII81_RS17335 (GII81_17335) - 3301486..3302346 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  GII81_RS17340 (GII81_17340) degQ 3302531..3302671 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII81_RS17345 (GII81_17345) - 3302893..3303018 (+) 126 WP_003228793.1 hypothetical protein -
  GII81_RS17350 (GII81_17350) - 3303134..3303502 (+) 369 WP_119899729.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=398002 GII81_RS17320 WP_003220716.1 3298280..3298924(-) (comA) [Bacillus subtilis strain MB9_B1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=398002 GII81_RS17320 WP_003220716.1 3298280..3298924(-) (comA) [Bacillus subtilis strain MB9_B1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment