Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HQ939_RS03750 Genome accession   NZ_CP054198
Coordinates   679849..680478 (-) Length   209 a.a.
NCBI ID   WP_005712712.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 674849..685478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS03735 (HQ939_03740) ligA 675544..677571 (+) 2028 WP_021117954.1 NAD-dependent DNA ligase LigA -
  HQ939_RS03740 (HQ939_03745) recQ 677629..679458 (-) 1830 WP_021116614.1 ATP-dependent DNA helicase RecQ Machinery gene
  HQ939_RS03745 (HQ939_03750) cyaY 679458..679766 (-) 309 WP_010785933.1 iron donor protein CyaY -
  HQ939_RS03750 (HQ939_03755) dinR/lexA 679849..680478 (-) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  HQ939_RS03755 (HQ939_03760) - 680742..681188 (+) 447 WP_021112089.1 DoxX family protein -
  HQ939_RS03760 (HQ939_03765) - 681209..681511 (+) 303 WP_010785931.1 hypothetical protein -
  HQ939_RS03765 (HQ939_03770) - 681580..682476 (+) 897 WP_173631998.1 DUF692 domain-containing protein -
  HQ939_RS03770 (HQ939_03775) - 682485..683219 (+) 735 WP_042906508.1 DUF2063 domain-containing protein -
  HQ939_RS03775 (HQ939_03780) - 683223..683798 (+) 576 WP_021112093.1 sigma-70 family RNA polymerase sigma factor -
  HQ939_RS03780 (HQ939_03785) - 683800..684015 (+) 216 WP_035522002.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23240.65 Da        Isoelectric Point: 5.6315

>NTDB_id=397997 HQ939_RS03750 WP_005712712.1 679849..680478(-) (dinR/lexA) [Glaesserella parasuis strain YHP170504]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=397997 HQ939_RS03750 WP_005712712.1 679849..680478(-) (dinR/lexA) [Glaesserella parasuis strain YHP170504]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGGATGCC
GCCAACTCGTGTAGAAATTGCACGCGAAATAGGGTTTAAATCGCCAAATGCCGCAGAAGAACATCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGAACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCCGCAAATGATGAA
GAGGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAGGCGATTGAACATATTGAAAAACATTATCCTGT
GAATGGAGCAATGTTTTCACCAGCCGCTGATTACCTTCTTAAGGTGAATGGGAACTCAATGGAGAAAATTGGCATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACCAAATCTGTTCGTAATGGGCAAGTGGTTGTCGCTCGTGTTGATGATGAAGTG
ACCGTCAAACGCTTAGAGAAAAAAGGTGACTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTATCATCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCTGTCGGCGTTATTCGTAGCAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.725

97.608

0.378

Multiple sequence alignment