Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   HQ939_RS03740 Genome accession   NZ_CP054198
Coordinates   677629..679458 (-) Length   609 a.a.
NCBI ID   WP_021116614.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672629..684458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS03710 (HQ939_03715) frdC 672726..673121 (+) 396 WP_016528237.1 fumarate reductase subunit FrdC -
  HQ939_RS03715 (HQ939_03720) frdD 673135..673479 (+) 345 WP_021112084.1 fumarate reductase subunit FrdD -
  HQ939_RS03725 (HQ939_03730) cysZ 673798..674553 (-) 756 WP_021112085.1 sulfate transporter CysZ -
  HQ939_RS03730 (HQ939_03735) zipA 674662..675480 (+) 819 WP_021112086.1 cell division protein ZipA -
  HQ939_RS03735 (HQ939_03740) ligA 675544..677571 (+) 2028 WP_021117954.1 NAD-dependent DNA ligase LigA -
  HQ939_RS03740 (HQ939_03745) recQ 677629..679458 (-) 1830 WP_021116614.1 ATP-dependent DNA helicase RecQ Machinery gene
  HQ939_RS03745 (HQ939_03750) cyaY 679458..679766 (-) 309 WP_010785933.1 iron donor protein CyaY -
  HQ939_RS03750 (HQ939_03755) dinR/lexA 679849..680478 (-) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  HQ939_RS03755 (HQ939_03760) - 680742..681188 (+) 447 WP_021112089.1 DoxX family protein -
  HQ939_RS03760 (HQ939_03765) - 681209..681511 (+) 303 WP_010785931.1 hypothetical protein -
  HQ939_RS03765 (HQ939_03770) - 681580..682476 (+) 897 WP_173631998.1 DUF692 domain-containing protein -
  HQ939_RS03770 (HQ939_03775) - 682485..683219 (+) 735 WP_042906508.1 DUF2063 domain-containing protein -
  HQ939_RS03775 (HQ939_03780) - 683223..683798 (+) 576 WP_021112093.1 sigma-70 family RNA polymerase sigma factor -
  HQ939_RS03780 (HQ939_03785) - 683800..684015 (+) 216 WP_035522002.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69133.39 Da        Isoelectric Point: 7.6530

>NTDB_id=397996 HQ939_RS03740 WP_021116614.1 677629..679458(-) (recQ) [Glaesserella parasuis strain YHP170504]
MSVIPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSRRFSVMGYHAGMTMQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHYIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATTYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIVCD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=397996 HQ939_RS03740 WP_021116614.1 677629..679458(-) (recQ) [Glaesserella parasuis strain YHP170504]
ATGTCAGTTATACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGCAAAGATTGCTTGGTGATTATGACGACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTAATTTCGCTAATGAAGGATCAGGTAGATCAA
CTGCTCACCAATGGTGTTGAAGCAGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCGGGACAACTCAAGCTACTTTACCTTTCACCCGAAAAGGTAATGACATCAAATTTTTTTCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCAGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCACTGACTGCAACTGCCGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGTTAGAAGATCCCCATACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAACTGATCAAATTTATCAGCAGTCAGCAAGGGAAAAGTGGGATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCGCCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GATGCAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGGATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGACGAGCAGGGAGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGTTGGCTACACAAGGT
ATTACTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATTATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCGCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCGACAACTTATGTGCAGAAACAGCAAGCTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATCCCTCCTTATGTGGTTTTCAATGACGCTACCCTA
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGGCTTATTAGAGAGCATTTATATCATATAGAAAGTATTGTTTGTGATTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

RQC domain (RQC)

(402-509)

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

DEAD/DEAH box helicase (DEAD)

(25-181)

HRDC domain (HRDC)

(530-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.696

97.209

0.386