Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   INV104_RS02865 Genome accession   NC_017591
Coordinates   543433..543699 (+) Length   88 a.a.
NCBI ID   WP_001818764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV104     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 538433..548699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INV104_RS02845 (INV104_04830) - 538540..539049 (+) 510 WP_000619941.1 GNAT family N-acetyltransferase -
  INV104_RS02850 (INV104_04840) pheT 539126..541531 (+) 2406 WP_000961596.1 phenylalanine--tRNA ligase subunit beta -
  INV104_RS02855 (INV104_04850) - 541704..542705 (-) 1002 WP_000597994.1 endonuclease/exonuclease/phosphatase family protein -
  INV104_RS02860 (INV104_04860) - 542861..543349 (+) 489 Protein_555 transposase -
  INV104_RS02865 (INV104_04870) HI0659 543433..543699 (+) 267 WP_001818764.1 helix-turn-helix domain-containing protein Machinery gene
  INV104_RS02870 (INV104_04880) metE 543960..546209 (+) 2250 WP_000108203.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  INV104_RS02875 (INV104_04890) metF 546273..547139 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9627.08 Da        Isoelectric Point: 4.2720

>NTDB_id=39789 INV104_RS02865 WP_001818764.1 543433..543699(+) (HI0659) [Streptococcus pneumoniae INV104]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=39789 INV104_RS02865 WP_001818764.1 543433..543699(+) (HI0659) [Streptococcus pneumoniae INV104]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

87.5

0.5

Multiple sequence alignment