Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII83_RS16165 Genome accession   NZ_CP045818
Coordinates   3121968..3122612 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116968..3127612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS16130 (GII83_16130) mrpB 3118158..3118589 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  GII83_RS16135 (GII83_16135) mrpC 3118589..3118930 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII83_RS16140 (GII83_16140) mrpD 3118923..3120404 (+) 1482 WP_038429539.1 Na+/H+ antiporter subunit D -
  GII83_RS16145 (GII83_16145) mrpE 3120410..3120886 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII83_RS16150 (GII83_16150) mrpF 3120886..3121170 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII83_RS16155 (GII83_16155) mnhG 3121154..3121528 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  GII83_RS16160 (GII83_16160) yuxO 3121569..3121949 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GII83_RS16165 (GII83_16165) comA 3121968..3122612 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII83_RS16170 (GII83_16170) comP 3122693..3124990 (-) 2298 WP_153912412.1 histidine kinase Regulator
  GII83_RS16175 (GII83_16175) comX 3124998..3125159 (-) 162 WP_049140565.1 competence pheromone ComX -
  GII83_RS16180 (GII83_16180) - 3125174..3126034 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  GII83_RS16185 (GII83_16185) degQ 3126219..3126359 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII83_RS21320 - 3126581..3126643 (+) 63 Protein_3148 hypothetical protein -
  GII83_RS16190 (GII83_16190) - 3126821..3127189 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=397842 GII83_RS16165 WP_003220716.1 3121968..3122612(-) (comA) [Bacillus subtilis strain MB9_B6]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=397842 GII83_RS16165 WP_003220716.1 3121968..3122612(-) (comA) [Bacillus subtilis strain MB9_B6]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment