Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII86_RS16945 Genome accession   NZ_CP045816
Coordinates   3146829..3147473 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141829..3152473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS16910 (GII86_16910) mrpB 3143019..3143450 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  GII86_RS16915 (GII86_16915) mrpC 3143450..3143791 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII86_RS16920 (GII86_16920) mrpD 3143784..3145265 (+) 1482 WP_046160793.1 Na+/H+ antiporter subunit D -
  GII86_RS16925 (GII86_16925) mrpE 3145271..3145747 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII86_RS16930 (GII86_16930) mrpF 3145747..3146031 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII86_RS16935 (GII86_16935) mnhG 3146015..3146389 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  GII86_RS16940 (GII86_16940) yuxO 3146430..3146810 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GII86_RS16945 (GII86_16945) comA 3146829..3147473 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII86_RS16950 (GII86_16950) comP 3147554..3149851 (-) 2298 WP_087614687.1 histidine kinase Regulator
  GII86_RS16955 (GII86_16955) comX 3149859..3150020 (-) 162 WP_003241045.1 competence pheromone ComX -
  GII86_RS16960 (GII86_16960) - 3150035..3150895 (-) 861 WP_046160795.1 polyprenyl synthetase family protein -
  GII86_RS16965 (GII86_16965) degQ 3151080..3151220 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII86_RS16970 (GII86_16970) - 3151442..3151567 (+) 126 WP_120028613.1 hypothetical protein -
  GII86_RS16975 (GII86_16975) - 3151682..3152050 (+) 369 WP_046160796.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=397683 GII86_RS16945 WP_003220716.1 3146829..3147473(-) (comA) [Bacillus subtilis strain P5_B2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=397683 GII86_RS16945 WP_003220716.1 3146829..3147473(-) (comA) [Bacillus subtilis strain P5_B2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment