Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSN5_RS08750 Genome accession   NC_014976
Coordinates   1652893..1653582 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis BSn5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647893..1658582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS08715 (BSn5_08635) flgN 1648074..1648556 (-) 483 WP_015714799.1 flagellar protein FlgN -
  BSN5_RS08720 (BSn5_08640) flgM 1648572..1648838 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSN5_RS08725 (BSn5_08645) yvyF 1648919..1649338 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BSN5_RS08730 (BSn5_08650) comFC 1649411..1650133 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  BSN5_RS08735 (BSn5_08655) comFB 1650097..1650393 (-) 297 WP_014478130.1 late competence protein ComFB -
  BSN5_RS08740 (BSn5_08660) comFA 1650453..1651844 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  BSN5_RS08745 (BSn5_08665) fakBA 1651950..1652795 (-) 846 WP_003227986.1 DegV family protein -
  BSN5_RS08750 (BSn5_08670) degU 1652893..1653582 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSN5_RS08755 (BSn5_08675) degS 1653665..1654822 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BSN5_RS08760 (BSn5_08680) yvyE 1655039..1655692 (+) 654 WP_015714801.1 YigZ family protein -
  BSN5_RS08765 (BSn5_08685) tagV 1655692..1656867 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  BSN5_RS08770 (BSn5_08690) tagO 1656940..1658016 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=39766 BSN5_RS08750 WP_003219701.1 1652893..1653582(-) (degU) [Bacillus subtilis BSn5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=39766 BSN5_RS08750 WP_003219701.1 1652893..1653582(-) (degU) [Bacillus subtilis BSn5]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment