Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HRS05_RS10145 Genome accession   NZ_CP054161
Coordinates   2132178..2132693 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain STO_Bone2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2127178..2137693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS05_RS10095 (HRS05_10025) csrA 2127792..2127977 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HRS05_RS10130 (HRS05_10060) yqaB 2129408..2129974 (+) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HRS05_RS10135 (HRS05_10065) yqaA 2129971..2130399 (+) 429 WP_001287454.1 YqaA family protein -
  HRS05_RS10140 (HRS05_10070) gshA 2130472..2132028 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  HRS05_RS10145 (HRS05_10075) luxS 2132178..2132693 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HRS05_RS10150 (HRS05_10080) emrB 2132757..2134295 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HRS05_RS10155 (HRS05_10085) emrA 2134312..2135484 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HRS05_RS10160 (HRS05_10090) emrR 2135611..2136141 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HRS05_RS10165 (HRS05_10095) ygaH 2136232..2136567 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  HRS05_RS10170 (HRS05_10100) ygaZ 2136557..2137294 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=397629 HRS05_RS10145 WP_001130211.1 2132178..2132693(+) (luxS) [Escherichia coli strain STO_Bone2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=397629 HRS05_RS10145 WP_001130211.1 2132178..2132693(+) (luxS) [Escherichia coli strain STO_Bone2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment