Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HRE60_RS09785 Genome accession   NZ_CP054153
Coordinates   2130026..2131126 (+) Length   366 a.a.
NCBI ID   WP_073687256.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2125026..2136126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS09760 (HRE60_09760) pgsA 2125568..2126110 (-) 543 WP_002885640.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HRE60_RS09765 (HRE60_09765) - 2126123..2126980 (-) 858 WP_181670820.1 RodZ domain-containing protein -
  HRE60_RS09770 (HRE60_09770) - 2127039..2128316 (-) 1278 WP_084915176.1 pitrilysin family protein -
  HRE60_RS09775 (HRE60_09775) - 2128318..2129568 (-) 1251 WP_181670821.1 pitrilysin family protein -
  HRE60_RS09780 (HRE60_09780) yaaA 2129646..2130023 (+) 378 WP_014635201.1 S4 domain-containing protein YaaA -
  HRE60_RS09785 (HRE60_09785) recF 2130026..2131126 (+) 1101 WP_073687256.1 DNA replication/repair protein RecF Machinery gene
  HRE60_RS09790 (HRE60_09790) guaB 2131307..2132788 (-) 1482 WP_021144763.1 IMP dehydrogenase -
  HRE60_RS09795 (HRE60_09795) trpS 2132967..2133989 (-) 1023 WP_002883969.1 tryptophan--tRNA ligase -
  HRE60_RS09800 (HRE60_09800) - 2134418..2135290 (+) 873 WP_002883963.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42222.19 Da        Isoelectric Point: 7.7934

>NTDB_id=397578 HRE60_RS09785 WP_073687256.1 2130026..2131126(+) (recF) [Streptococcus salivarius strain DB-B5]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPSDLKTFLVNNGNIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=397578 HRE60_RS09785 WP_073687256.1 2130026..2131126(+) (recF) [Streptococcus salivarius strain DB-B5]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAACGCTCAAGGAAAAACAAATATTCTTGAGGCAATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAGGAACTGATTCAATTTCAGCAAAATACTCTCAAACTGAACGGCATTGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTCAACCATCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACGGTGGTGCTCTTTGCTCCTGAGGATTTACAACTTATAAAAGGATCTCCAAGCCTAAGGCGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACCTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCCTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAAC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCACATAGGGATGATTTGACATTTTA
CATCAATGACATGAACGCATCTTTCGGCAGTCAAGGGCAGCAACGTAGCCTCATTCTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAACCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ATCTGATTTAAAGACCTTCTTAGTCAATAATGGTAATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.363

97.814

0.639
  recF Bacillus subtilis subsp. subtilis str. 168

43.631

100

0.44

Multiple sequence alignment