Detailed information NTG0397470

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HQ617_RS10360
• Genome accession: NZ_CP054055
• Coordinates: 2033817..2034926 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain GBS47
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2028817..2039926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ617_RS10335 (HQ617_10280)	-	2029189..2030028 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
HQ617_RS10340 (HQ617_10285)	pgsA	2030028..2030570 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
HQ617_RS10345 (HQ617_10290)	yfmH	2030693..2031976 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
HQ617_RS10350 (HQ617_10295)	yfmF	2031978..2033222 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HQ617_RS10355 (HQ617_10300)	yaaA	2033461..2033814 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
HQ617_RS10360 (HQ617_10305)	recF	2033817..2034926 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
HQ617_RS10365 (HQ617_10310)	-	2034938..2035804 (-)	867	WP_000398683.1	GRP family sugar transporter	-
HQ617_RS10370 (HQ617_10315)	-	2035860..2036522 (-)	663	WP_001868421.1	helix-turn-helix transcriptional regulator	-
HQ617_RS10375 (HQ617_10320)	guaB	2036597..2038078 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
HQ617_RS10380 (HQ617_10325)	-	2038235..2038720 (-)	486	WP_001034427.1	arginine repressor	-
HQ617_RS10385 (HQ617_10330)	-	2038730..2039410 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=397470 HQ617_RS10360 WP_000264870.1 2033817..2034926(+) (recF) [Streptococcus agalactiae strain GBS47]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=397470 HQ617_RS10360 WP_000264870.1 2033817..2034926(+) (recF) [Streptococcus agalactiae strain GBS47]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447