Detailed information NTG0397363

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HQ612_RS10825
• Genome accession: NZ_CP054054
• Coordinates: 2113230..2114339 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain SS111
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2108230..2119339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ612_RS10800 (HQ612_10755)	-	2108602..2109441 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
HQ612_RS10805 (HQ612_10760)	pgsA	2109441..2109983 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
HQ612_RS10810 (HQ612_10765)	yfmH	2110106..2111389 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
HQ612_RS10815 (HQ612_10770)	yfmF	2111391..2112635 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HQ612_RS10820 (HQ612_10775)	yaaA	2112874..2113227 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
HQ612_RS10825 (HQ612_10780)	recF	2113230..2114339 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
HQ612_RS10830 (HQ612_10785)	-	2114351..2115217 (-)	867	WP_000398683.1	GRP family sugar transporter	-
HQ612_RS10835 (HQ612_10790)	-	2115273..2115935 (-)	663	WP_001868421.1	helix-turn-helix transcriptional regulator	-
HQ612_RS10840 (HQ612_10795)	guaB	2116010..2117491 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
HQ612_RS10845 (HQ612_10800)	-	2117648..2118133 (-)	486	WP_001034427.1	arginine repressor	-
HQ612_RS10850 (HQ612_10805)	-	2118143..2118823 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=397363 HQ612_RS10825 WP_000264870.1 2113230..2114339(+) (recF) [Streptococcus agalactiae strain SS111]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=397363 HQ612_RS10825 WP_000264870.1 2113230..2114339(+) (recF) [Streptococcus agalactiae strain SS111]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447