Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | TSC_RS12305 | Genome accession | NC_014974 |
| Coordinates | 2340342..2340650 (+) | Length | 102 a.a. |
| NCBI ID | WP_015718357.1 | Uniprot ID | E8PQY8 |
| Organism | Thermus scotoductus SA-01 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2335342..2345650
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TSC_RS12270 (TSC_c24930) | - | 2335644..2336099 (+) | 456 | WP_015718349.1 | hypothetical protein | - |
| TSC_RS12275 (TSC_c24940) | pfkA | 2336148..2337116 (-) | 969 | WP_015718350.1 | 6-phosphofructokinase | - |
| TSC_RS12280 (TSC_c24950) | rsmI | 2337113..2337931 (-) | 819 | WP_015718351.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| TSC_RS12285 (TSC_c24960) | - | 2337933..2338430 (-) | 498 | WP_015718352.1 | TFIIB-type zinc ribbon-containing protein | - |
| TSC_RS12290 (TSC_c24970) | - | 2338514..2339044 (-) | 531 | WP_015718353.1 | inorganic diphosphatase | - |
| TSC_RS12295 (TSC_c24980) | - | 2339055..2339705 (-) | 651 | WP_015718354.1 | glycerophosphodiester phosphodiesterase | - |
| TSC_RS13510 (TSC_c24990) | - | 2339729..2340223 (+) | 495 | WP_015718355.1 | YcxB family protein | - |
| TSC_RS13380 (TSC_c25000) | - | 2340208..2340369 (+) | 162 | WP_015718356.1 | hypothetical protein | - |
| TSC_RS12305 (TSC_c25010) | comEA | 2340342..2340650 (+) | 309 | WP_015718357.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| TSC_RS12310 (TSC_c25020) | comA/comEC | 2340637..2342700 (+) | 2064 | WP_015718358.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| TSC_RS12315 (TSC_c25030) | - | 2342688..2343500 (-) | 813 | WP_015718359.1 | ParB/RepB/Spo0J family partition protein | - |
| TSC_RS12320 (TSC_c25040) | soj | 2343484..2344236 (-) | 753 | WP_015718360.1 | chromosome-partitioning ATPase Soj | - |
| TSC_RS12325 (TSC_c25050) | rsmG | 2344230..2344958 (-) | 729 | WP_172959258.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 11149.27 Da Isoelectric Point: 8.5053
>NTDB_id=39730 TSC_RS12305 WP_015718357.1 2340342..2340650(+) (comEA) [Thermus scotoductus SA-01]
MVLGYLLAVALLALFSLWPKLVPKPQPVWVETLAEASFEPPAPEPISLNQASLEELMSLPGVGPVLAQRIVAGRPYARVE
DLLRVKGIGPATLERLRPYVRP
MVLGYLLAVALLALFSLWPKLVPKPQPVWVETLAEASFEPPAPEPISLNQASLEELMSLPGVGPVLAQRIVAGRPYARVE
DLLRVKGIGPATLERLRPYVRP
Nucleotide
Download Length: 309 bp
>NTDB_id=39730 TSC_RS12305 WP_015718357.1 2340342..2340650(+) (comEA) [Thermus scotoductus SA-01]
GTGGTCCTTGGCTACCTCCTCGCGGTAGCCCTCCTGGCCCTCTTCAGCCTCTGGCCCAAGCTGGTCCCGAAACCCCAGCC
GGTGTGGGTGGAAACCCTGGCGGAGGCCAGCTTTGAGCCCCCAGCCCCTGAGCCCATTAGCTTGAACCAAGCCAGCCTCG
AGGAGCTCATGAGCCTCCCTGGGGTCGGCCCCGTGCTGGCCCAGAGGATCGTGGCGGGAAGACCCTACGCCCGGGTGGAG
GACCTCCTGAGGGTCAAGGGCATCGGCCCCGCCACCCTGGAACGGCTCAGGCCCTATGTCCGGCCCTAG
GTGGTCCTTGGCTACCTCCTCGCGGTAGCCCTCCTGGCCCTCTTCAGCCTCTGGCCCAAGCTGGTCCCGAAACCCCAGCC
GGTGTGGGTGGAAACCCTGGCGGAGGCCAGCTTTGAGCCCCCAGCCCCTGAGCCCATTAGCTTGAACCAAGCCAGCCTCG
AGGAGCTCATGAGCCTCCCTGGGGTCGGCCCCGTGCTGGCCCAGAGGATCGTGGCGGGAAGACCCTACGCCCGGGTGGAG
GACCTCCTGAGGGTCAAGGGCATCGGCCCCGCCACCCTGGAACGGCTCAGGCCCTATGTCCGGCCCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Thermus thermophilus HB27 |
75.49 |
100 |
0.755 |
| comEA | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.667 |
100 |
0.441 |