Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HRD51_RS38385 Genome accession   NZ_CP054019
Coordinates   8670071..8671888 (-) Length   605 a.a.
NCBI ID   WP_235095471.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8665071..8676888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS38360 (HRD51_37865) lspA 8666986..8667483 (+) 498 WP_235096209.1 signal peptidase II -
  HRD51_RS38365 (HRD51_37870) - 8667691..8668557 (+) 867 WP_205368081.1 dienelactone hydrolase family protein -
  HRD51_RS38370 (HRD51_37875) - 8668646..8668942 (+) 297 WP_235095470.1 hypothetical protein -
  HRD51_RS38375 (HRD51_37880) - 8668930..8669196 (-) 267 WP_229922323.1 DUF6207 family protein -
  HRD51_RS41975 (HRD51_37885) - 8669248..8669985 (-) 738 WP_205368078.1 4'-phosphopantetheinyl transferase superfamily protein -
  HRD51_RS38385 (HRD51_37890) rcrQ 8670071..8671888 (-) 1818 WP_235095471.1 ABC transporter ATP-binding protein Regulator
  HRD51_RS38390 (HRD51_37895) - 8671866..8673620 (-) 1755 WP_235095472.1 ABC transporter ATP-binding protein -
  HRD51_RS38395 (HRD51_37900) - 8673918..8674952 (+) 1035 WP_205368074.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 64561.28 Da        Isoelectric Point: 6.9253

>NTDB_id=397252 HRD51_RS38385 WP_235095471.1 8670071..8671888(-) (rcrQ) [Streptomyces sp. A1-5]
MASPDDPEEERTAPRPARRLVGLLRPHRRAVALAVLTGVGGIVLNAFGPLLLGRVTDLIADGVLGGGPGPAPGIDFGAIG
RLLVVLLALYIVASLFMLAQGRLVASAVWRTIHELRRDAREKLTRLPLGHFDRQPAGELLSRTTNDIDNLQQTLQQTLAE
LITSIFSLLTMLVLMLVISPSLAAVMLLSVPVSALVAARISKRAQPHYAAQWSANGTLNAHVEEVCTGHALIKGFDRRAA
VEERFDACNDAVYRAAAKAQFASGAMEPVMMFVANLGYVLVAVVGAWKVVNGSLTLGDVQAFILYARQFSQPIVEIASVA
GRLQSGIASAQRVFTLLDAPEQAPDPHRPGTPARAEGRVEFADVSFRYSPDTPLIENLSLTVEPGSTVAIVGPTGAGKTT
LGNLLMRFYEPDSGRILLDGTDTATMTRDDLRSRFGLVLQDTWLFGGTIAENIAYGAPGACRADVEEAARATCADRFIRT
LPQGYDTVLDDESGTVSAGEKQLLTVARAFLAKPAVLVLDEATSSVDTRTEVLIQRAMHSLRAGRTSFVIAHRLSTIRDA
DLIVVMDAGRIVEQGTHAQLLCAQGLYARLHAARTHTPTAGAAAG

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=397252 HRD51_RS38385 WP_235095471.1 8670071..8671888(-) (rcrQ) [Streptomyces sp. A1-5]
ATGGCCTCGCCGGACGACCCTGAGGAGGAGCGGACCGCGCCCCGGCCGGCACGTCGGCTCGTCGGCCTGCTGCGTCCGCA
CCGCCGCGCCGTGGCACTCGCCGTGTTGACGGGCGTCGGCGGGATCGTGCTCAACGCGTTCGGCCCGCTGCTGCTCGGCC
GGGTCACCGATCTGATCGCCGACGGCGTGCTCGGCGGCGGCCCGGGCCCGGCGCCCGGGATCGACTTCGGCGCGATCGGC
CGGCTGCTGGTGGTCCTGCTGGCGCTCTACATCGTGGCGTCGCTGTTCATGCTGGCGCAGGGCCGGCTGGTGGCGTCCGC
GGTGTGGCGCACCATCCACGAACTGCGCCGCGACGCCCGGGAGAAGCTGACCCGGCTGCCGCTGGGCCACTTCGACCGGC
AGCCGGCCGGTGAGCTGCTCAGCCGCACCACCAACGACATCGACAACCTCCAACAAACCCTCCAGCAGACCCTCGCCGAG
CTGATCACCTCGATCTTCTCGCTGCTGACGATGCTGGTGCTGATGCTGGTGATCTCGCCGTCGCTGGCCGCGGTGATGCT
GTTGAGCGTGCCGGTCTCGGCGTTGGTCGCGGCCCGGATCAGCAAGCGCGCGCAGCCCCACTACGCCGCGCAGTGGTCCG
CGAACGGCACCCTCAACGCCCATGTGGAGGAGGTGTGCACCGGTCATGCGCTGATCAAGGGCTTCGACCGGCGCGCGGCG
GTCGAGGAGCGCTTCGACGCCTGCAACGACGCGGTGTACCGGGCGGCGGCCAAGGCACAGTTCGCCTCCGGTGCCATGGA
ACCGGTCATGATGTTCGTCGCCAACCTCGGCTATGTGCTGGTGGCCGTCGTCGGCGCCTGGAAGGTCGTCAACGGCTCCC
TGACCCTCGGCGACGTGCAAGCGTTCATCCTCTACGCCCGCCAGTTCAGCCAGCCGATCGTGGAGATCGCCTCGGTGGCC
GGCAGGCTCCAGTCCGGCATCGCCTCCGCCCAGCGCGTCTTCACCCTGCTCGACGCCCCCGAGCAGGCCCCGGACCCGCA
CCGGCCCGGCACGCCCGCCCGCGCCGAGGGCCGCGTCGAGTTCGCCGACGTGTCCTTCCGCTACTCCCCCGACACGCCCC
TCATCGAGAACCTCTCGCTCACCGTGGAACCGGGCAGCACCGTGGCGATCGTCGGCCCCACCGGCGCCGGCAAGACCACC
CTCGGCAACCTCCTGATGCGCTTCTACGAACCGGACTCCGGCCGCATCCTCCTGGACGGCACCGACACCGCGACGATGAC
CCGCGACGACCTGCGGTCCCGCTTCGGGCTGGTGCTCCAGGACACCTGGCTGTTCGGCGGCACCATCGCGGAGAACATCG
CGTACGGCGCACCCGGGGCCTGCCGCGCGGATGTCGAGGAGGCGGCCCGCGCGACCTGCGCCGACCGCTTCATCCGCACC
CTGCCGCAGGGCTACGACACCGTGCTGGACGACGAGTCGGGCACCGTCAGCGCCGGCGAGAAGCAACTGCTGACCGTGGC
CCGGGCCTTCCTCGCCAAACCGGCCGTCCTCGTCCTGGACGAGGCCACCAGCTCCGTGGACACCCGGACCGAGGTCCTGA
TCCAACGCGCCATGCACTCCCTGCGGGCGGGCCGGACCAGCTTCGTGATCGCGCACCGCCTGTCCACGATCCGCGACGCG
GACCTGATCGTCGTGATGGACGCCGGCCGCATCGTCGAGCAGGGCACCCACGCTCAACTCCTGTGCGCGCAGGGCCTGTA
CGCCCGGCTGCACGCAGCCCGCACCCACACTCCCACCGCGGGCGCCGCGGCCGGCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(32-312)

ABC transporter (ABC_tran)

(376-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.207

94.38

0.398

Multiple sequence alignment