Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HRD51_RS23365 Genome accession   NZ_CP054019
Coordinates   5211146..5212558 (-) Length   470 a.a.
NCBI ID   WP_235094018.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5206146..5217558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS23345 (HRD51_23010) - 5206923..5207582 (+) 660 WP_235094015.1 pyridoxamine 5'-phosphate oxidase family protein -
  HRD51_RS23350 (HRD51_23015) - 5207894..5208721 (+) 828 WP_235094016.1 hypothetical protein -
  HRD51_RS23355 (HRD51_23020) - 5208850..5209848 (+) 999 WP_235094017.1 NAD-dependent epimerase/dehydratase family protein -
  HRD51_RS23360 (HRD51_23025) disA 5209892..5211013 (-) 1122 WP_205366134.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HRD51_RS23365 (HRD51_23030) radA/sms 5211146..5212558 (-) 1413 WP_235094018.1 DNA repair protein RadA Machinery gene
  HRD51_RS23370 (HRD51_23035) - 5212786..5214543 (+) 1758 WP_235094019.1 sigma-70 family RNA polymerase sigma factor -
  HRD51_RS23375 (HRD51_23040) - 5214568..5215434 (-) 867 WP_039634085.1 hypothetical protein -
  HRD51_RS23380 (HRD51_23045) - 5215492..5216418 (+) 927 WP_205366137.1 Ppx/GppA phosphatase family protein -
  HRD51_RS23385 (HRD51_23050) - 5216684..5217496 (+) 813 WP_205370423.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49492.69 Da        Isoelectric Point: 7.9959

>NTDB_id=397217 HRD51_RS23365 WP_235094018.1 5211146..5212558(-) (radA/sms) [Streptomyces sp. A1-5]
MATRKTSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAALPIGQVDGKQATARTTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASAAHRTLYVTGEESASQVRLRADRIGALDEDLYLAAETDLSAV
LGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPTDPGKIPDGMRVMEVADVGQALSVLPKRVRREAPREEEARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=397217 HRD51_RS23365 WP_235094018.1 5211146..5212558(-) (radA/sms) [Streptomyces sp. A1-5]
ATGGCAACTCGTAAAACGTCGGCCAAGGATCGCCCCTCGTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACCGCGCCCG
GCCGGGTCACCACCGCCGCCCTGCCCATCGGCCAGGTCGACGGCAAGCAGGCCACCGCCCGAACGACCGGCGTGCCCGAG
CTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCCGGCGCGGTCGTGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCAC
CCTCCTGCTGGACGTCGCCGCCAAGGCCGCCTCCGCCGCCCACCGCACGCTCTATGTGACCGGCGAGGAGTCCGCCAGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGAGGATCTCTACCTGGCCGCCGAGACGGACCTGTCCGCCGTC
CTCGGCCATCTGGACAGCGTCAAGCCCTCGCTGCTGGTCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGACGG
CGCCCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGGGCGTCCAAGGAGCGCGGCATGTCCACCC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTCGTCCTCCAC
TTCGAGGGCGACCGGCACGCCCGCCTCCGCCTCGTCCGCGGCGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTGACCCGCCGCGCCGAGCCGGTGC
CCGGGACGTGCCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTGACCGTCGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTGGGCAAGCGCGACATCTACAGCGCCACGGTCGGCGGGGTGAAGCTCAGCGAGCCGGCCGCCGACC
TCGCCGTCGCCCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCCATCGGCGAGGTCGGG
CTGGCCGGGGAGGTCCGGAGGGTCACCGGCGTCCAGCGCCGCCTGTCGGAGGCCGCCCGGCTCGGCTTCACGCACGCCCT
GGTCCCCACCGACCCCGGCAAGATCCCCGACGGAATGCGGGTCATGGAGGTCGCCGACGTCGGGCAGGCGTTGTCCGTGC
TGCCCAAGCGGGTCCGCCGGGAGGCCCCGCGAGAGGAGGAAGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.17

0.419
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404

Multiple sequence alignment