Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HRD51_RS22445 Genome accession   NZ_CP054019
Coordinates   5010984..5011583 (+) Length   199 a.a.
NCBI ID   WP_039634325.1    Uniprot ID   A0A9X8MS73
Organism   Streptomyces sp. A1-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5005984..5016583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS22420 (HRD51_22100) - 5006205..5007470 (+) 1266 WP_235093940.1 hypothetical protein -
  HRD51_RS22435 (HRD51_22115) - 5007960..5010446 (+) 2487 WP_235093941.1 DNA polymerase III subunit gamma and tau -
  HRD51_RS22440 (HRD51_22120) - 5010576..5010932 (+) 357 WP_073444326.1 YbaB/EbfC family nucleoid-associated protein -
  HRD51_RS22445 (HRD51_22125) recR 5010984..5011583 (+) 600 WP_039634325.1 recombination mediator RecR Machinery gene
  HRD51_RS22450 (HRD51_22130) - 5011576..5012238 (+) 663 WP_039634322.1 DUF5063 domain-containing protein -
  HRD51_RS22455 (HRD51_22135) - 5012592..5013863 (+) 1272 WP_205366013.1 aspartate kinase -
  HRD51_RS22460 (HRD51_22140) - 5013860..5014975 (+) 1116 WP_235093942.1 aspartate-semialdehyde dehydrogenase -
  HRD51_RS22465 (HRD51_22145) - 5015638..5016213 (+) 576 WP_018536550.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21763.11 Da        Isoelectric Point: 4.8542

>NTDB_id=397212 HRD51_RS22445 WP_039634325.1 5010984..5011583(+) (recR) [Streptomyces sp. A1-5]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCSVCGNVAQEEQCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLTVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=397212 HRD51_RS22445 WP_039634325.1 5010984..5011583(+) (recR) [Streptomyces sp. A1-5]
GTGTATGAAGGCGTGGTCCAGGACCTGATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGACCGATGTCCGCCGGCTCGCGAACGCGCTGATGGAGGTGAAGGCGAAGGTCC
GGTTCTGCAGCGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCCGGGTCTGCCTTGACCCGCGGCGCGATCCGGCGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGAGGGAGTTCCGCGGCCGCTACCACGTCCTCGG
CGGGGCGATCAGTCCGATCGAGGGCGTCGGACCCGACGACCTGCGGATACGGGAACTCCTGGCCAGGCTCGCGGACGGCA
CCGTCACCGAGCTGATCCTGGCCACCGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTACCTGGCCCGGATGATCAAG
CCGATGGGCCTCACAGTGACGCGACTGGCCAGTGGGCTGCCGGTCGGAGGCGATCTGGAGTACGCAGACGAGGTCACGCT
CGGGCGGGCCTTCGAAGGGAGGAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X8MS73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452