Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FOC63_RS08930 Genome accession   NZ_CP054015
Coordinates   1767088..1768887 (+) Length   599 a.a.
NCBI ID   WP_012961857.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762088..1773887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS08910 (FOC63_08910) - 1762130..1763002 (-) 873 WP_009854038.1 LysR family transcriptional regulator -
  FOC63_RS08915 (FOC63_08915) - 1763103..1764128 (+) 1026 WP_009854039.1 YeiH family protein -
  FOC63_RS08920 (FOC63_08920) - 1764333..1765709 (+) 1377 WP_043878553.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  FOC63_RS08925 (FOC63_08925) - 1765812..1766966 (-) 1155 WP_009854041.1 low temperature requirement protein A -
  FOC63_RS08930 (FOC63_08930) uvrC 1767088..1768887 (+) 1800 WP_012961857.1 excinuclease ABC subunit UvrC Machinery gene
  FOC63_RS08935 (FOC63_08935) - 1768874..1769245 (+) 372 WP_009854043.1 ACT domain-containing protein -
  FOC63_RS08940 (FOC63_08940) - 1769371..1771101 (+) 1731 WP_009854044.1 hypothetical protein -
  FOC63_RS08945 (FOC63_08945) - 1771259..1771861 (+) 603 WP_009854045.1 nitroreductase family protein -
  FOC63_RS08950 (FOC63_08950) pepV 1772022..1773428 (+) 1407 WP_009854046.1 dipeptidase PepV -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69195.82 Da        Isoelectric Point: 9.0040

>NTDB_id=397161 FOC63_RS08930 WP_012961857.1 1767088..1768887(+) (uvrC) [Streptococcus gallolyticus strain FDAARGOS_755]
MNELIKHKLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTGSNTEALLLEIN
LIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMYFGPYPDSGAATEIKRLLDRIFPFKKCTNPANKVC
FYYHLGQCKAHTICHVDHDYFVDMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMS
QDMMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHFIPKEIFIPKEIDEELVKA
IVDTKIIKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKDVKKTYGAVENIGELLNIPKPVRIEAFDNSNIQGTSPVAAMV
VFVNGKPSKKDYRKFKIKTVVGPDDYASMREVIYRRYSRVMKDGLVPPDLIIIDGGQGQVNVARDVIENKLGLDIPIAGL
QKNDKHQTHELLFGDPLEVVELPRNSEEFFLLQRIQDEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKS
LPNIQKADIDDIVNCGIPRNVATAIKEKLSEEEAVNANH

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=397161 FOC63_RS08930 WP_012961857.1 1767088..1768887(+) (uvrC) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGAATGAACTGATTAAACATAAACTGGAGCTATTGCCAGATAGCCCAGGATGCTATATACACAAGGATAAAAATGGCAC
GATTATTTATGTTGGTAAGGCAAAAAATCTGAAAAATCGTGTGCGTAGCTATTTTCATGGCAGCCATAATACCAAAACAG
AACTTTTGGTTTCAGAAATAGAGGATTTTGAGTATATTGTCACAGGTTCCAATACCGAGGCGTTGCTTCTTGAAATCAAT
CTCATTCAAGAAAATATGCCAAAATACAATATCAAGCTCAAAGATGATAAATCCTATCCTTTCATCAAAATCACAACTAA
TGAGCAGTACCCACGTTTAATGATTACCCGCCAAATCAAAAAAGACGGTGCCATGTATTTTGGACCCTATCCTGATTCGG
GAGCAGCAACGGAAATCAAACGCCTGTTAGACCGCATTTTTCCGTTTAAGAAATGTACCAACCCTGCTAATAAAGTTTGT
TTTTATTACCATTTAGGGCAATGTAAAGCACATACGATTTGTCATGTTGACCACGACTATTTTGTTGATATGGCGCACGA
TGTGAAAAATTTCCTTAACGGTCAAGACAATAAAATTGTTGACCAACTTAAAGATAAAATGCAAAAAGCGTCAGATTTAA
TGGAATTTGAACGTGCGGCAGAATATCGCGATTTACTGCAAGCTATTTCAACTTTGCGCACGAAACAGCGCGTGATGAGC
CAAGATATGATGGACCGTGATATTTTTGGCTACTACGTTGACAAAGGCTGGATGTGTGTGCAAGTATTTTTTGTTCGCCA
AGGGAAACTCATTCAACGTGATGTTAATATGTTTCCTTATTACAATGACCCAGAAGAAGATTTTTTGACTTACATGGGAC
AATTTTACCGTGACAATAAGCACTTTATTCCCAAAGAAATTTTCATTCCTAAAGAAATTGATGAAGAATTGGTCAAGGCA
ATTGTTGATACGAAAATCATCAAGCCCCAACGTGGTGAGAAAAAGCAGCTTGTTAATCTAGCTATCAAAAATGCACGTGT
GAGTTTGCAACAAAAATTTGATTTGCTTGAAAAAGATGTTAAGAAAACTTATGGTGCTGTTGAAAATATCGGCGAATTGC
TTAACATTCCAAAGCCTGTTCGTATTGAAGCCTTTGATAACTCAAATATTCAAGGAACAAGCCCTGTCGCTGCTATGGTG
GTCTTTGTAAATGGAAAACCAAGTAAGAAAGATTATCGAAAATTCAAGATTAAAACGGTTGTCGGACCAGATGATTATGC
CAGCATGCGCGAGGTCATCTATCGCCGTTATAGCCGCGTGATGAAAGATGGCTTAGTGCCACCAGATTTGATTATCATCG
ATGGTGGTCAAGGTCAGGTCAATGTGGCGCGTGATGTTATTGAAAACAAGCTCGGTCTTGATATTCCAATTGCTGGTCTG
CAAAAAAATGATAAACACCAAACGCACGAATTATTGTTTGGTGACCCTTTAGAAGTTGTTGAATTGCCACGAAATTCCGA
AGAATTTTTCTTGTTACAACGTATCCAAGATGAGGTGCACCGTTTTGCTATTACCTTCCACCGTCAAGTGCGTAGTAAAA
ATTCATTCTCATCAAAACTTGATGGCATTGCTGGATTGGGACCAAAGCGCAAGCAATTACTCATGAAGCACTTTAAGAGC
CTACCCAATATTCAAAAGGCTGATATAGACGATATTGTAAACTGTGGTATTCCACGAAATGTCGCAACTGCGATTAAAGA
AAAATTAAGTGAGGAGGAAGCTGTCAATGCTAACCATTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-524)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(198-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

78.644

98.497

0.775
  uvrC Streptococcus pneumoniae R6

78.475

98.497

0.773
  uvrC Streptococcus pneumoniae D39

78.475

98.497

0.773