Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FOC63_RS07490 Genome accession   NZ_CP054015
Coordinates   1456776..1457372 (+) Length   198 a.a.
NCBI ID   WP_043878535.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1451776..1462372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS07470 (FOC63_07470) - 1452313..1452879 (-) 567 WP_009853753.1 DUF3267 domain-containing protein -
  FOC63_RS07475 (FOC63_07475) - 1453130..1453651 (+) 522 WP_009853754.1 transcription repressor NadR -
  FOC63_RS07480 (FOC63_07480) - 1453848..1454402 (+) 555 WP_043878534.1 hypothetical protein -
  FOC63_RS07485 (FOC63_07485) pbp2b 1454557..1456710 (+) 2154 WP_009853756.1 penicillin-binding protein PBP2B -
  FOC63_RS07490 (FOC63_07490) recR 1456776..1457372 (+) 597 WP_043878535.1 recombination mediator RecR Machinery gene
  FOC63_RS07495 (FOC63_07495) - 1457610..1458656 (+) 1047 WP_009853758.1 D-alanine--D-alanine ligase -
  FOC63_RS07500 (FOC63_07500) - 1458761..1459321 (-) 561 WP_009853759.1 folate family ECF transporter S component -
  FOC63_RS07505 (FOC63_07505) - 1459565..1460929 (+) 1365 WP_009853760.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FOC63_RS07510 (FOC63_07510) - 1460942..1462096 (+) 1155 WP_043878645.1 polymerase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21726.89 Da        Isoelectric Point: 4.5286

>NTDB_id=397147 FOC63_RS07490 WP_043878535.1 1456776..1457372(+) (recR) [Streptococcus gallolyticus strain FDAARGOS_755]
MLYPTPIAKLIDSFTKLPGIGIKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDEDPCNICTDETRDHS
VILVVEDSKDVSAMEKIQEYRGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVNEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=397147 FOC63_RS07490 WP_043878535.1 1456776..1457372(+) (recR) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGCTTTATCCAACACCTATCGCAAAGCTGATTGATAGTTTTACAAAATTGCCAGGAATTGGTATAAAAACAGCAACACG
TTTGGCTTTCTACACGATTGGAATGTCAGATGAAGATGTGAATGAATTCGCCAAAAATTTATTGGCAGCTAAGCGTGAAT
TGACTTATTGTTCCGTTTGTGGGAATTTAACAGATGAAGACCCTTGTAATATCTGTACAGATGAAACTCGTGATCATTCC
GTTATTTTAGTGGTTGAAGATTCAAAAGATGTATCTGCCATGGAAAAAATTCAAGAGTATCGTGGCTTGTACCATGTCTT
GCATGGCTTGATTTCACCAATGAACGGTGTCGGACCAGATGATATTAATTTGAAATCATTGATTACACGTTTAATGGATA
GTGAGGTCAACGAAGTGATTATTGCAACCAATGCAACCGCAGACGGTGAAGCAACATCTATGTATATCTCACGTGTCCTA
AAACCAGCAGGAATCAAGGTAACACGTTTAGCACGTGGACTGGCTGTTGGATCAGACATCGAATACGCCGACGAAGTCAC
CCTACTTCGTGCCATAGAAAACCGAACAGAATTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48