Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   TTJL18_RS00650 Genome accession   NC_017587
Coordinates   120633..121664 (-) Length   343 a.a.
NCBI ID   WP_014628901.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 115633..126664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS00625 (TtJL18_0122) pilD 116620..117687 (+) 1068 WP_014628896.1 A24 family peptidase Machinery gene
  TTJL18_RS00630 (TtJL18_0123) - 117716..118225 (+) 510 WP_014628897.1 DUF2939 domain-containing protein -
  TTJL18_RS00635 (TtJL18_0124) - 118239..119159 (+) 921 WP_014628898.1 nitroreductase family protein -
  TTJL18_RS00640 (TtJL18_0125) - 119113..119889 (-) 777 WP_014628899.1 C40 family peptidase -
  TTJL18_RS00645 (TtJL18_0126) - 119890..120648 (-) 759 WP_014628900.1 DUF721 domain-containing protein -
  TTJL18_RS00650 (TtJL18_0127) recF 120633..121664 (-) 1032 WP_014628901.1 DNA replication/repair protein RecF Machinery gene
  TTJL18_RS00655 (TtJL18_0128) - 121666..122838 (-) 1173 WP_014628902.1 MFS transporter -
  TTJL18_RS00660 (TtJL18_0129) pstB 122849..123664 (-) 816 WP_014628903.1 phosphate ABC transporter ATP-binding protein PstB -
  TTJL18_RS00665 (TtJL18_0130) pstA 123658..124863 (-) 1206 WP_014628904.1 phosphate ABC transporter permease PstA -
  TTJL18_RS00670 (TtJL18_0131) pstC 124856..125758 (-) 903 WP_041444409.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37770.67 Da        Isoelectric Point: 8.9565

>NTDB_id=39710 TTJL18_RS00650 WP_014628901.1 120633..121664(-) (recF) [Thermus thermophilus JL-18]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLLAEVETELGAYR
LEHRLGPGGREVFLNGKRVSLRALWELPGSVLVSPLDLEVVLGAKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=39710 TTJL18_RS00650 WP_014628901.1 120633..121664(-) (recF) [Thermus thermophilus JL-18]
ATGCGGCTTCTCCTCTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCTTGGCTTCTCGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCTTCCTCAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGTCGTCCTCGGGGCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTTTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAAACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.246

98.251

0.405

Multiple sequence alignment