Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TSC_RS01045 Genome accession   NC_014974
Coordinates   179711..181195 (-) Length   494 a.a.
NCBI ID   WP_015716141.1    Uniprot ID   W2U587
Organism   Thermus scotoductus SA-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 174711..186195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSC_RS01010 (TSC_c02070) - 175117..176193 (-) 1077 WP_015716136.1 YbfB/YjiJ family MFS transporter -
  TSC_RS01015 (TSC_c02080) - 176183..176935 (-) 753 WP_015716137.1 hypothetical protein -
  TSC_RS01020 (TSC_c02090) - 176928..177833 (-) 906 WP_015716138.1 ABC transporter ATP-binding protein -
  TSC_RS01025 (TSC_c02100) - 177835..178155 (-) 321 WP_041438825.1 nucleotide pyrophosphohydrolase -
  TSC_RS13400 (TSC_c02110) - 178183..178737 (+) 555 WP_014629763.1 transposase family protein -
  TSC_RS13185 (TSC_c02120) - 178758..179273 (+) 516 WP_015715994.1 hypothetical protein -
  TSC_RS01040 (TSC_c02130) mgsA 179337..179714 (+) 378 WP_041437987.1 methylglyoxal synthase -
  TSC_RS01045 (TSC_c02140) comM 179711..181195 (-) 1485 WP_015716141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TSC_RS01050 (TSC_c02150) - 181419..182561 (-) 1143 WP_015716142.1 nitrate/nitrite transporter -
  TSC_RS01055 (TSC_c02160) - 182563..183375 (-) 813 WP_015716143.1 EamA family transporter -
  TSC_RS01060 (TSC_c02170) - 183372..184262 (-) 891 WP_015716144.1 EamA family transporter -
  TSC_RS01065 (TSC_c02180) - 184368..185495 (+) 1128 WP_015716145.1 NAD(P) transhydrogenase subunit alpha -
  TSC_RS01070 (TSC_c02190) - 185495..185797 (+) 303 WP_008630585.1 proton-translocating transhydrogenase family protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52899.12 Da        Isoelectric Point: 7.8280

>NTDB_id=39710 TSC_RS01045 WP_015716141.1 179711..181195(-) (comM) [Thermus scotoductus SA-01]
MLAQVRSYTLFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNTGFPYPQARVVVNLAPAELRKEGSHF
DLPIALGLLAAQGVVPLEGLAGLAVAGELGLDGTLRPVPGAVNLALGALGEGKKLLLPLESAKEAALVEGVEVYGVENLL
QAVAYLRGEEEPRRVEPDDPVAALEALDLRDVKGQAKAKRALEIAAAGYHHLLMVGSPGSGKTMLARRLPFLLPPLSQEA
ALEVSRIHSAAGQILKGLVRTPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSRDALEALRQPLEDGV
VTVSRARASLTFPARFLLVAAMNPCPCGWYGDPERACTCTPASRQRYVGKISGPLLDRFDLVVEVPRLTPAELARAPEGE
GTEAVRERVLRARERMLARQGRPNGELAGKALREHVRLTSGAEHLLQAAAKRMLLSARSYDRLLRVARTIADLQGAESVE
ENHVAEALAYRKTL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=39710 TSC_RS01045 WP_015716141.1 179711..181195(-) (comM) [Thermus scotoductus SA-01]
ATGCTAGCCCAGGTGCGAAGCTATACCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTCAGCCCCGG
GCTTCCCAGCTACGCCCTGGTGGGGTTGCCGGACAAGGCGGTGGAGGAAAGCCGGGAGCGGGTCAGGGCCGCCCTGAAGA
ACACGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAACTCCGTAAGGAAGGAAGCCACTTT
GACCTGCCCATCGCCTTGGGGCTTCTGGCCGCCCAGGGGGTGGTGCCCCTGGAGGGCCTGGCGGGCCTGGCGGTGGCCGG
GGAGCTGGGCCTGGATGGAACCCTGCGCCCGGTGCCCGGGGCGGTGAACCTGGCTTTGGGGGCCTTGGGCGAAGGGAAAA
AGCTCCTCCTGCCCCTGGAAAGCGCCAAGGAGGCCGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGTGGAAAACCTCCTT
CAGGCGGTGGCCTACCTGAGGGGAGAAGAGGAGCCCAGGAGGGTGGAACCCGACGATCCCGTGGCCGCCCTGGAGGCTTT
GGACCTCCGGGACGTGAAGGGCCAGGCCAAGGCCAAGAGGGCCCTGGAGATCGCCGCCGCCGGTTACCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGAAAAACCATGCTGGCCAGGCGCCTTCCCTTTCTGCTTCCCCCTCTGAGCCAGGAGGCC
GCCCTCGAGGTAAGCCGCATCCACTCCGCCGCCGGGCAGATCCTTAAGGGCCTGGTGCGCACGCCCCCTTTCCGCGCCCC
CCACCACACGGTGAGCTACGCGGGTCTCATCGGGGGCGGGGCCATCCCCAAGCCGGGGGAGGTTTCCCTGGCCCACCGGG
GGGTGCTTTTCCTGGACGAGTTCCCCGAGTTTTCCCGGGATGCCCTGGAGGCCCTCCGCCAGCCCCTCGAGGACGGGGTG
GTGACCGTCTCCCGGGCCAGGGCCAGCCTCACCTTTCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGTATGGGGACCCGGAGCGGGCCTGCACCTGCACCCCGGCAAGCCGCCAGCGCTACGTGGGGAAGATCTCCGGAC
CTCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCTTAACCCCAGCTGAGCTCGCCCGCGCCCCCGAAGGGGAA
GGCACCGAGGCCGTGCGGGAAAGGGTCCTAAGGGCCCGGGAGAGGATGCTCGCCCGGCAGGGCAGGCCCAACGGGGAGCT
TGCGGGAAAGGCCCTGAGGGAGCACGTGCGCTTAACCTCGGGGGCGGAACACCTCCTCCAGGCAGCGGCCAAGCGGATGC
TCCTTTCCGCCAGGAGCTACGACCGCCTCCTCCGGGTAGCCCGCACCATTGCCGACCTGCAGGGAGCGGAGAGCGTGGAG
GAAAACCACGTGGCCGAGGCCTTGGCCTACCGCAAGACCCTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W2U587

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.485

100

0.486
  comM Haemophilus influenzae Rd KW20

46.386

100

0.468
  comM Glaesserella parasuis strain SC1401

45.984

100

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.462
  comM Vibrio campbellii strain DS40M4

45.951

100

0.46
  comM Legionella pneumophila strain ERS1305867

45.272

100

0.455
  comM Legionella pneumophila str. Paris

45.272

100

0.455

Multiple sequence alignment