Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FOC71_RS08575 Genome accession   NZ_CP053999
Coordinates   1697504..1698100 (-) Length   198 a.a.
NCBI ID   WP_003072014.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1692504..1703100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS08550 (FOC71_08550) - 1692761..1693447 (-) 687 WP_037584548.1 TIGR02206 family membrane protein -
  FOC71_RS08555 (FOC71_08555) - 1693454..1694158 (-) 705 WP_003072021.1 TIGR02206 family membrane protein -
  FOC71_RS08560 (FOC71_08560) - 1694165..1694713 (-) 549 WP_003072020.1 DUF1697 domain-containing protein -
  FOC71_RS08565 (FOC71_08565) murF 1694703..1696073 (-) 1371 WP_003072018.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FOC71_RS08570 (FOC71_08570) - 1696327..1697373 (-) 1047 WP_037584547.1 D-alanine--D-alanine ligase -
  FOC71_RS08575 (FOC71_08575) recR 1697504..1698100 (-) 597 WP_003072014.1 recombination mediator RecR Machinery gene
  FOC71_RS08580 (FOC71_08580) pbp2b 1698111..1700171 (-) 2061 WP_172851990.1 penicillin-binding protein PBP2B -
  FOC71_RS08585 (FOC71_08585) - 1700328..1701020 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  FOC71_RS08590 (FOC71_08590) - 1701158..1701619 (-) 462 WP_003072010.1 Fur family transcriptional regulator -
  FOC71_RS08595 (FOC71_08595) - 1701787..1702062 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  FOC71_RS08600 (FOC71_08600) - 1702191..1703024 (-) 834 WP_003072007.1 DegV family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21650.70 Da        Isoelectric Point: 4.3571

>NTDB_id=397053 FOC71_RS08575 WP_003072014.1 1697504..1698100(-) (recR) [Streptococcus intermedius strain FDAARGOS_769]
MLYPTPLAKLIESFSKLPGIGIKSATRLAFYTISMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDNPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=397053 FOC71_RS08575 WP_003072014.1 1697504..1698100(-) (recR) [Streptococcus intermedius strain FDAARGOS_769]
ATGCTTTATCCAACACCGCTTGCAAAATTGATTGAAAGTTTTTCAAAATTACCAGGAATTGGCATCAAATCAGCAACACG
TTTGGCATTTTATACCATTAGTATGAGTGATGATGATGTTAATGAATTTGCTAAAAATTTACTTGCAGCAAAACGTGAGT
TAACATATTGCTCTATTTGTGGGAATTTAACGGATGACAATCCCTGTGCTATCTGTACCGATGAGACTCGTGACCAATCG
ACTATTTTAGTTGTAGAAGATAGCCGAGATGTCTCTGCTATGGAAAACATTCAAGAATATCATGGCTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGTCCAGATGACATCAATCTGAAAAGTTTAATCACACGATTGATGGATA
GTGAAGTGACAGAAGTGATTGTAGCAACTAATGCAACAGCAGATGGAGAAGCAACTTCCATGTATATCTCACGAGTGTTA
AAGCCAGCTGGTATCAAAGTGACACGTCTTGCTCGAGGATTAGCAGTTGGTTCTGATATTGAATATGCAGATGAAGTGAC
TTTGCTTCGAGCCATTGAAAATCGTACGGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

89.394

100

0.894
  recR Bacillus subtilis subsp. subtilis str. 168

61.616

100

0.616
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49