Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FOC71_RS01805 Genome accession   NZ_CP053999
Coordinates   343736..344833 (+) Length   365 a.a.
NCBI ID   WP_003075474.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338736..349833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS01780 (FOC71_01780) pgsA 339215..339754 (-) 540 WP_003075464.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC71_RS01785 (FOC71_01785) rodZ 339765..340577 (-) 813 WP_003075466.1 cytoskeleton protein RodZ -
  FOC71_RS01790 (FOC71_01790) - 340636..341931 (-) 1296 WP_003075468.1 pitrilysin family protein -
  FOC71_RS01795 (FOC71_01795) - 341931..343178 (-) 1248 WP_003075470.1 pitrilysin family protein -
  FOC71_RS01800 (FOC71_01800) yaaA 343354..343734 (+) 381 WP_003075472.1 S4 domain-containing protein YaaA -
  FOC71_RS01805 (FOC71_01805) recF 343736..344833 (+) 1098 WP_003075474.1 DNA replication/repair protein RecF Machinery gene
  FOC71_RS01810 (FOC71_01810) guaB 345674..347155 (-) 1482 WP_003075475.1 IMP dehydrogenase -
  FOC71_RS01815 (FOC71_01815) trpS 347293..348318 (-) 1026 WP_003075477.1 tryptophan--tRNA ligase -
  FOC71_RS01820 (FOC71_01820) galE 348400..349395 (-) 996 WP_003075479.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 42081.36 Da        Isoelectric Point: 8.4364

>NTDB_id=396985 FOC71_RS01805 WP_003075474.1 343736..344833(+) (recF) [Streptococcus intermedius strain FDAARGOS_769]
MWLKNLQIQYFRNYKLTEIDFHPGLNIFLGENAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSNDSLKISGQLAKETGN
ISLEIDLTPKGRTTKVNHLKQSKLSDYVGNMNVVLFAPEDLQLIKGTPALRRKFIDIELGQIKPIYLSDLSQYHHVLKQR
NAYLKAAPKIDETFLTVLDDQLVEFGCRVIQHRTEFLKKLEHFGQQKHLELSSNLENLTIKYCSSIPLSDPNKLKESFQI
ALRQSRSRDLFKKNTGIGPHRDDIAFYINNMNATFGSQGQHRSMVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLETISQNIQTFITTTTLEHLKHLPSDIKIFSIHDGHFMENQV

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=396985 FOC71_RS01805 WP_003075474.1 343736..344833(+) (recF) [Streptococcus intermedius strain FDAARGOS_769]
ATGTGGTTAAAAAACTTACAAATTCAATATTTTCGCAATTATAAATTAACTGAAATAGATTTTCACCCTGGTCTCAATAT
TTTTTTAGGGGAAAACGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCGTTGACACGAAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAACGATTCTTTAAAAATTTCTGGACAACTTGCCAAAGAAACTGGGAAT
ATCTCTTTAGAAATTGACTTGACCCCTAAAGGAAGAACTACAAAGGTTAATCATTTAAAACAAAGTAAATTATCCGATTA
TGTTGGAAATATGAATGTTGTTCTATTTGCTCCAGAAGATTTACAACTGATTAAAGGGACACCAGCTCTTAGACGGAAAT
TTATCGACATAGAATTAGGGCAAATTAAACCAATCTATTTATCTGATTTATCACAATATCATCATGTTTTAAAACAACGA
AATGCTTATCTAAAGGCAGCCCCAAAAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGCTAGTAGAGTTTGGTTG
CCGTGTTATACAACATCGGACAGAGTTTCTCAAAAAACTAGAACACTTTGGTCAACAAAAACATTTAGAGCTTTCAAGTA
ATTTAGAAAACTTAACCATTAAGTATTGCTCTTCTATTCCACTTTCAGATCCCAATAAATTGAAAGAATCTTTCCAAATT
GCATTAAGACAAAGCCGTAGTAGAGATTTATTTAAAAAAAATACTGGAATTGGTCCCCATCGAGATGATATCGCTTTTTA
TATTAATAACATGAATGCCACTTTTGGTAGTCAAGGACAACATCGAAGTATGGTTCTATCTCTTAAGTTGGCAGAGATTG
AACTTATGGAAACTGTGACCAAAGAAAAACCAATTCTTCTACTTGACGATGTTATGAGCGAACTTGACAACAATCGTCAA
TTGAATTTGCTTGAAACTATCTCTCAAAATATACAAACATTTATCACAACAACAACTTTAGAACATCTGAAACATTTGCC
TTCTGATATTAAAATTTTCTCAATTCATGATGGACATTTTATGGAAAATCAAGTGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

72.346

98.082

0.71
  recF Bacillus subtilis subsp. subtilis str. 168

47.159

96.438

0.455

Multiple sequence alignment