Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FOC73_RS08375 Genome accession   NZ_CP053998
Coordinates   1726413..1727009 (+) Length   198 a.a.
NCBI ID   WP_002886148.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721413..1732009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS08360 (FOC73_08360) - 1722341..1723195 (+) 855 WP_037599235.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  FOC73_RS08365 (FOC73_08365) - 1723199..1724035 (+) 837 WP_002886083.1 NAD(P)H-hydrate dehydratase -
  FOC73_RS08370 (FOC73_08370) pbp2b 1724157..1726271 (+) 2115 WP_002885934.1 penicillin-binding protein PBP2B -
  FOC73_RS08375 (FOC73_08375) recR 1726413..1727009 (+) 597 WP_002886148.1 recombination mediator RecR Machinery gene
  FOC73_RS08380 (FOC73_08380) licT 1727113..1727952 (+) 840 WP_037605527.1 BglG family transcription antiterminator LicT -
  FOC73_RS08385 (FOC73_08385) ybeY 1728162..1728659 (+) 498 WP_002886021.1 rRNA maturation RNase YbeY -
  FOC73_RS08390 (FOC73_08390) - 1728640..1729044 (+) 405 WP_002885950.1 diacylglycerol kinase family protein -
  FOC73_RS08395 (FOC73_08395) era 1729065..1729964 (+) 900 WP_002886016.1 GTPase Era -
  FOC73_RS08400 (FOC73_08400) mutM 1730009..1730830 (+) 822 WP_002885927.1 DNA-formamidopyrimidine glycosylase -
  FOC73_RS08405 (FOC73_08405) coaE 1730827..1731420 (+) 594 WP_037605511.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21782.95 Da        Isoelectric Point: 4.5326

>NTDB_id=396952 FOC73_RS08375 WP_002886148.1 1726413..1727009(+) (recR) [Streptococcus salivarius strain FDAARGOS_771]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCNICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEIIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=396952 FOC73_RS08375 WP_002886148.1 1726413..1727009(+) (recR) [Streptococcus salivarius strain FDAARGOS_771]
ATGCTTTATCCTACTCCAATTGCGAAGCTGATTGATAGTTTTTCAAAACTCCCTGGAATTGGGGCTAAAACAGCGACACG
CCTAGCTTTTTATACCATTAGTATGTCTGATGAAGATGTCAATGATTTTGCAAAAAACCTCTTGGCAGCAAAACGTGAAT
TGACTTATTGTTCGGTCTGTGGTCGTTTGACAGATGATGATCCATGTAATATTTGTACCGATGAAACCAGAGATCGTACT
AAGATTTTGGTTGTTGAAGATTCCAAAGATGTTTCAGCTATGGAAAAGATTCAGGAATACCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGACGATATTAACCTGAAAAGTTTGATTACCCGCCTTATGGACA
GCGAGGTTGACGAGATTATTATTGCCACTAATGCAACAGCAGATGGTGAGGCGACGTCTATGTATATTTCGCGTGTCCTT
AAACCTGCAGGAATCAAAGTGACTCGTTTAGCGCGTGGTTTGGCAGTCGGTTCTGACATTGAGTATGCTGATGAAGTGAC
CTTGCTAAGAGCTATCGAAAATCGAACAGAACTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47