Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FOC73_RS05345 Genome accession   NZ_CP053998
Coordinates   1113695..1114795 (+) Length   366 a.a.
NCBI ID   WP_002885858.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1108695..1119795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS05320 (FOC73_05320) pgsA 1109237..1109779 (-) 543 WP_002885640.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC73_RS05325 (FOC73_05325) - 1109792..1110649 (-) 858 WP_002885739.1 helix-turn-helix transcriptional regulator -
  FOC73_RS05330 (FOC73_05330) - 1110708..1111985 (-) 1278 WP_002885703.1 pitrilysin family protein -
  FOC73_RS05335 (FOC73_05335) - 1111987..1113237 (-) 1251 WP_002885880.1 pitrilysin family protein -
  FOC73_RS05340 (FOC73_05340) yaaA 1113315..1113692 (+) 378 WP_002885745.1 S4 domain-containing protein YaaA -
  FOC73_RS05345 (FOC73_05345) recF 1113695..1114795 (+) 1101 WP_002885858.1 DNA replication/repair protein RecF Machinery gene
  FOC73_RS05350 (FOC73_05350) - 1115146..1116348 (-) 1203 WP_037605196.1 IS110 family transposase -
  FOC73_RS05355 (FOC73_05355) guaB 1116600..1118081 (-) 1482 WP_002883960.1 IMP dehydrogenase -
  FOC73_RS05360 (FOC73_05360) trpS 1118260..1119282 (-) 1023 WP_002883969.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42208.16 Da        Isoelectric Point: 7.7934

>NTDB_id=396910 FOC73_RS05345 WP_002885858.1 1113695..1114795(+) (recF) [Streptococcus salivarius strain FDAARGOS_771]
MWLEKIDIQHFRNYTETSVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGARVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPSDLKTFLVNNGNIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=396910 FOC73_RS05345 WP_002885858.1 1113695..1114795(+) (recF) [Streptococcus salivarius strain FDAARGOS_771]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAACCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTGAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTACTATTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGCCTGAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACTTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCCTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAGC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCACATAGGGATGATTTGACATTTTA
CATCAATGACATGAACGCATCTTTCGGCAGTCAGGGGCAGCAACGTAGCCTCATTCTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAACCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ATCTGATTTAAAGACCTTCTTAGTCAATAATGGTAATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.363

97.814

0.639
  recF Bacillus subtilis subsp. subtilis str. 168

43.902

100

0.443