Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FOC73_RS02515 Genome accession   NZ_CP053998
Coordinates   563453..564097 (-) Length   214 a.a.
NCBI ID   WP_002884791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 558453..569097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS02490 (FOC73_02490) - 560529..561527 (-) 999 WP_002884406.1 NAD(P)/FAD-dependent oxidoreductase -
  FOC73_RS02495 (FOC73_02495) trmD 561529..562248 (-) 720 WP_002884254.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FOC73_RS02500 (FOC73_02500) rimM 562238..562756 (-) 519 WP_002884411.1 ribosome maturation factor RimM -
  FOC73_RS02515 (FOC73_02515) vraR 563453..564097 (-) 645 WP_002884791.1 response regulator transcription factor Regulator
  FOC73_RS02520 (FOC73_02520) - 564087..565097 (-) 1011 WP_002884643.1 sensor histidine kinase -
  FOC73_RS02525 (FOC73_02525) liaF 565094..565792 (-) 699 WP_002884385.1 cell wall-active antibiotics response protein LiaF -
  FOC73_RS02530 (FOC73_02530) - 565956..566714 (-) 759 WP_002884314.1 potassium channel family protein -
  FOC73_RS02535 (FOC73_02535) stkP/pknB 566860..568734 (-) 1875 WP_002884755.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23977.31 Da        Isoelectric Point: 4.5814

>NTDB_id=396866 FOC73_RS02515 WP_002884791.1 563453..564097(-) (vraR) [Streptococcus salivarius strain FDAARGOS_771]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=396866 FOC73_RS02515 WP_002884791.1 563453..564097(-) (vraR) [Streptococcus salivarius strain FDAARGOS_771]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGCCTTAAGAGTTTCTTGAATCTTCA
AGGAGATGTCGAAGTCGTTGGGGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCGGATGTGG
TTGTTATGGACCTTGTTATGCCTGAATTAGATGGTGTTCAAGCAACTTTGGAATTGCTCAAAGAATGGCCTGAAGCCAAG
ATTTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTACCCAGTCATTGAAGCTGGTGCTAAAGGCTATATGCTTAA
AACTAGTAGTGCGGCAGAGATTCTCAATAGTATCCGTAAGGTTTACCGTGGTGAAGAAGCTATCGAAACTGAGGTGGATA
ATAAGATTAAATACCATGATAGCCATCCGGACCTACACGATGACTTGACGGCACGTGAACGTGATATCTTGGCCCTTTTG
GCTAAAGGGTATGACAATCAAACCATTGCTAACGAGCTATTTATTTCATTGAAAACCGTTAAAACTCACGTGTCTAATAT
CCTTGGAAAACTCAATGTTGATGACCGTACTCAGGCTGTTGTTTATGCCTTTAGACATCATTTGGTTTCGCAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379