Detailed information NTG0039668

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VVMO6_RS02725
• Genome accession: NC_014965
• Coordinates: 551746..552738 (+)
• Length: 330 a.a.
• NCBI ID: WP_011079521.1
• Uniprot ID: A0A3Q0L3U7
• Organism: Vibrio vulnificus MO6-24/O
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 546746..557738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VVMO6_RS02690 (VVM_00956)	ftsB	546777..547058 (+)	282	WP_011079514.1	cell division protein FtsB	-
VVMO6_RS02695 (VVM_00958)	ispD	547058..547771 (+)	714	WP_013571123.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VVMO6_RS02700 (VVM_00959)	ispF	547768..548244 (+)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VVMO6_RS02705 (VVM_00960)	truD	548280..549323 (+)	1044	WP_013571124.1	tRNA pseudouridine(13) synthase TruD	-
VVMO6_RS02710 (VVM_00961)	surE	549329..550096 (+)	768	WP_013571125.1	5'/3'-nucleotidase SurE	-
VVMO6_RS02715 (VVM_00962)	-	550099..550725 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VVMO6_RS02720 (VVM_00964)	-	550769..551665 (+)	897	WP_013571126.1	peptidoglycan DD-metalloendopeptidase family protein	-
VVMO6_RS02725 (VVM_00967)	rpoS	551746..552738 (+)	993	WP_011079521.1	RNA polymerase sigma factor RpoS	Regulator
VVMO6_RS02730 (VVM_00972)	mutS	552814..555375 (-)	2562	WP_013571127.1	DNA mismatch repair protein MutS	-
VVMO6_RS02735 (VVM_00973)	pncC	555459..555962 (+)	504	WP_013571128.1	nicotinamide-nucleotide amidase	-
VVMO6_RS02740 (VVM_00974)	recA	556096..557145 (+)	1050	WP_011079524.1	recombinase RecA	Machinery gene
VVMO6_RS02745 (VVM_00976)	recX	557249..557710 (+)	462	WP_013571129.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38054.13 Da
• Isoelectric Point: 4.5114

>NTDB_id=39668 VVMO6_RS02725 WP_011079521.1 551746..552738(+) (rpoS) [Vibrio vulnificus MO6-24/O]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVKLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=39668 VVMO6_RS02725 WP_011079521.1 551746..552738(+) (rpoS) [Vibrio vulnificus MO6-24/O]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCAAACTTCGCGAGGAGTTTGATGCCAGCAACAAGAGCTTAGACG
CGACACAGCTTTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTAGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCGGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: A0A3Q0L3U7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836