Detailed information NTG0396643

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HQ616_RS10530
• Genome accession: NZ_CP053891
• Coordinates: 2074540..2075649 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain GBS20
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2069540..2080649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ616_RS10505 (HQ616_10440)	-	2069912..2070751 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
HQ616_RS10510 (HQ616_10445)	pgsA	2070751..2071293 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
HQ616_RS10515 (HQ616_10450)	yfmH	2071416..2072699 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
HQ616_RS10520 (HQ616_10455)	yfmF	2072701..2073945 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HQ616_RS10525 (HQ616_10460)	yaaA	2074184..2074537 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
HQ616_RS10530 (HQ616_10465)	recF	2074540..2075649 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
HQ616_RS10535 (HQ616_10470)	-	2075661..2076527 (-)	867	WP_000398683.1	GRP family sugar transporter	-
HQ616_RS10540 (HQ616_10475)	-	2076583..2077245 (-)	663	WP_001868421.1	helix-turn-helix transcriptional regulator	-
HQ616_RS10545 (HQ616_10480)	guaB	2077320..2078801 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
HQ616_RS10550 (HQ616_10485)	-	2078958..2079443 (-)	486	WP_001034427.1	arginine repressor	-
HQ616_RS10555 (HQ616_10490)	-	2079453..2080133 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=396643 HQ616_RS10530 WP_000264870.1 2074540..2075649(+) (recF) [Streptococcus agalactiae strain GBS20]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=396643 HQ616_RS10530 WP_000264870.1 2074540..2075649(+) (recF) [Streptococcus agalactiae strain GBS20]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447