Detailed information NTG0396536

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HQ618_RS10620
• Genome accession: NZ_CP053890
• Coordinates: 2091081..2092190 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain GBS68
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2086081..2097190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ618_RS10595 (HQ618_10535)	-	2086453..2087292 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
HQ618_RS10600 (HQ618_10540)	pgsA	2087292..2087834 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
HQ618_RS10605 (HQ618_10545)	yfmH	2087957..2089240 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
HQ618_RS10610 (HQ618_10550)	yfmF	2089242..2090486 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HQ618_RS10615 (HQ618_10555)	yaaA	2090725..2091078 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
HQ618_RS10620 (HQ618_10560)	recF	2091081..2092190 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
HQ618_RS10625 (HQ618_10565)	-	2092202..2093068 (-)	867	WP_000398683.1	GRP family sugar transporter	-
HQ618_RS10630 (HQ618_10570)	-	2093124..2093786 (-)	663	WP_001868421.1	helix-turn-helix transcriptional regulator	-
HQ618_RS10635 (HQ618_10575)	guaB	2093861..2095342 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
HQ618_RS10640 (HQ618_10580)	-	2095499..2095984 (-)	486	WP_001034427.1	arginine repressor	-
HQ618_RS10645 (HQ618_10585)	-	2095994..2096674 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=396536 HQ618_RS10620 WP_000264870.1 2091081..2092190(+) (recF) [Streptococcus agalactiae strain GBS68]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=396536 HQ618_RS10620 WP_000264870.1 2091081..2092190(+) (recF) [Streptococcus agalactiae strain GBS68]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447