Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   GH742_RS00855 Genome accession   NZ_CP045732
Coordinates   180024..180701 (+) Length   225 a.a.
NCBI ID   WP_203455739.1    Uniprot ID   -
Organism   Legionella sp. MW5194     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 175024..185701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH742_RS00835 (GH742_00830) - 175613..175792 (-) 180 WP_203455736.1 hypothetical protein -
  GH742_RS00840 (GH742_00835) sidP 175934..178792 (+) 2859 WP_203455737.1 Dot/Icm T4SS effector PI-3-phosphatase SidP -
  GH742_RS00845 (GH742_00840) dapB 178833..179564 (-) 732 WP_203455738.1 4-hydroxy-tetrahydrodipicolinate reductase -
  GH742_RS00850 (GH742_00845) - 179597..179782 (-) 186 WP_108291412.1 hypothetical protein -
  GH742_RS00855 (GH742_00850) rocC 180024..180701 (+) 678 WP_203455739.1 ProQ/FinO family protein Regulator
  GH742_RS00860 (GH742_00855) - 180741..181478 (-) 738 WP_203455740.1 polysaccharide deacetylase family protein -
  GH742_RS00865 (GH742_00860) - 181472..182707 (-) 1236 WP_203455741.1 O-antigen ligase -
  GH742_RS00870 (GH742_00865) pyk 182800..184218 (-) 1419 WP_203455742.1 pyruvate kinase -
  GH742_RS00875 (GH742_00870) - 184202..185389 (-) 1188 WP_203456795.1 phosphoglycerate kinase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25139.67 Da        Isoelectric Point: 10.4426

>NTDB_id=396421 GH742_RS00855 WP_203455739.1 180024..180701(+) (rocC) [Legionella sp. MW5194]
MRRQALHPLTAVINKSQKNHSKRARHEALNWLAKKFPEAFDNSQRIQPLKTGIMDDILAFAEEAAEAGLSKSKLREAVVI
FTRRLDYLACLKAREMRVDLQGNPVSVVTEDEAERAAAKIKRRIEKGLKNARNTAEAKAAPATPVKSDTQSPLYPQNASD
YASQYAERLSAYSASGPEAVMQTKRSAAVIVKHRNVKKTYDPEAVARLKEKLGLSRREEEKEASN

Nucleotide


Download         Length: 678 bp        

>NTDB_id=396421 GH742_RS00855 WP_203455739.1 180024..180701(+) (rocC) [Legionella sp. MW5194]
ATGAGAAGGCAAGCACTTCATCCTCTTACAGCAGTAATTAACAAATCTCAAAAAAACCATTCCAAACGGGCCCGGCACGA
GGCCTTAAACTGGCTGGCAAAAAAATTCCCGGAGGCCTTTGATAACAGTCAACGTATTCAACCGTTGAAAACCGGCATTA
TGGATGACATCCTTGCTTTTGCTGAGGAAGCGGCTGAAGCCGGTTTATCCAAAAGTAAGTTGCGTGAAGCCGTGGTTATT
TTTACCCGCCGTCTCGATTACCTGGCCTGCCTTAAAGCCCGGGAAATGCGGGTTGACTTACAGGGGAATCCCGTATCGGT
GGTCACTGAAGACGAGGCGGAGCGTGCGGCAGCTAAAATCAAGCGGCGAATTGAGAAGGGACTTAAAAACGCGCGTAACA
CCGCGGAAGCCAAGGCAGCACCTGCCACGCCAGTGAAAAGCGACACTCAGTCCCCTCTCTATCCTCAAAACGCTAGCGAC
TATGCGTCCCAATACGCTGAGCGTTTATCCGCCTACAGTGCATCGGGTCCTGAGGCCGTGATGCAAACCAAGCGCAGTGC
GGCGGTGATTGTCAAGCACCGTAATGTCAAAAAAACCTATGATCCCGAGGCCGTTGCCCGCCTGAAAGAAAAACTGGGTT
TATCCCGTCGCGAGGAAGAGAAAGAGGCCAGCAATTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(25-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

58.75

100

0.627

Multiple sequence alignment