Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GHT02_RS03885 Genome accession   NZ_CP045712
Coordinates   753824..754453 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FHI_NMBU_11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 748824..759453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHT02_RS03870 (GHT02_03885) helD 749066..751120 (-) 2055 WP_001297106.1 DNA helicase IV -
  GHT02_RS03875 (GHT02_03890) yccF 751243..751689 (+) 447 WP_001261231.1 YccF domain-containing protein -
  GHT02_RS03880 (GHT02_03895) yccS 751699..753861 (+) 2163 WP_000875023.1 YccS family putative transporter -
  GHT02_RS03885 (GHT02_03900) sxy/tfoX 753824..754453 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GHT02_RS03890 (GHT02_03905) sulA 754671..755180 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GHT02_RS03895 (GHT02_03910) ompA 755537..756577 (+) 1041 WP_000750416.1 porin OmpA -
  GHT02_RS03900 (GHT02_03915) matP 756653..757105 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GHT02_RS03905 (GHT02_03920) ycbZ 757291..759051 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=396266 GHT02_RS03885 WP_000839153.1 753824..754453(-) (sxy/tfoX) [Escherichia coli strain FHI_NMBU_11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=396266 GHT02_RS03885 WP_000839153.1 753824..754453(-) (sxy/tfoX) [Escherichia coli strain FHI_NMBU_11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment