Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   GG619_RS17820 Genome accession   NZ_CP045711
Coordinates   3655394..3655513 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain HN-Q-8     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650394..3660513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GG619_RS17795 (GG619_17795) - 3650831..3651259 (-) 429 WP_060673887.1 DUF1934 domain-containing protein -
  GG619_RS17800 (GG619_17800) - 3651413..3651925 (+) 513 Protein_3490 bacteriocin biosynthesis protein AlbG -
  GG619_RS17805 (GG619_17805) - 3651932..3652639 (-) 708 WP_060673885.1 YncE family protein -
  GG619_RS17810 (GG619_17810) - 3652679..3654034 (-) 1356 WP_060673883.1 YncE family protein -
  GG619_RS17815 (GG619_17815) rapF 3654265..3655410 (+) 1146 WP_015418439.1 tetratricopeptide repeat protein Regulator
  GG619_RS17820 (GG619_17820) phrF 3655394..3655513 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  GG619_RS17825 (GG619_17825) - 3655711..3655914 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  GG619_RS17830 (GG619_17830) - 3655928..3656131 (+) 204 WP_007407641.1 hypothetical protein -
  GG619_RS17835 (GG619_17835) - 3656166..3656351 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  GG619_RS17840 (GG619_17840) - 3656539..3656820 (+) 282 WP_007407643.1 hypothetical protein -
  GG619_RS17845 (GG619_17845) - 3656864..3657376 (+) 513 WP_031378560.1 stage II sporulation protein M -
  GG619_RS17855 (GG619_17855) - 3657967..3658185 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  GG619_RS17860 (GG619_17860) speB 3658353..3659225 (-) 873 WP_007407646.1 agmatinase -
  GG619_RS17865 (GG619_17865) speE 3659284..3660114 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=396262 GG619_RS17820 WP_015240778.1 3655394..3655513(+) (phrF) [Bacillus velezensis strain HN-Q-8]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=396262 GG619_RS17820 WP_015240778.1 3655394..3655513(+) (phrF) [Bacillus velezensis strain HN-Q-8]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment