Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GG619_RS16870 Genome accession   NZ_CP045711
Coordinates   3467414..3468103 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain HN-Q-8     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3462414..3473103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GG619_RS16835 (GG619_16835) - 3462612..3463094 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GG619_RS16840 (GG619_16840) flgM 3463109..3463375 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GG619_RS16845 (GG619_16845) - 3463445..3463864 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  GG619_RS16850 (GG619_16850) comFC 3463938..3464627 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  GG619_RS16855 (GG619_16855) - 3464633..3464917 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  GG619_RS16860 (GG619_16860) comFA 3464975..3466360 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  GG619_RS16865 (GG619_16865) - 3466468..3467316 (-) 849 WP_015418336.1 DegV family protein -
  GG619_RS16870 (GG619_16870) degU 3467414..3468103 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GG619_RS16875 (GG619_16875) degS 3468180..3469343 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GG619_RS16880 (GG619_16880) - 3469566..3470213 (+) 648 WP_003151384.1 YigZ family protein -
  GG619_RS16885 (GG619_16885) - 3470218..3471432 (+) 1215 WP_015418337.1 LCP family protein -
  GG619_RS16890 (GG619_16890) - 3471522..3472598 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=396256 GG619_RS16870 WP_003219701.1 3467414..3468103(-) (degU) [Bacillus velezensis strain HN-Q-8]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=396256 GG619_RS16870 WP_003219701.1 3467414..3468103(-) (degU) [Bacillus velezensis strain HN-Q-8]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment