Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GG619_RS16850 Genome accession   NZ_CP045711
Coordinates   3463938..3464627 (-) Length   229 a.a.
NCBI ID   WP_197093073.1    Uniprot ID   -
Organism   Bacillus velezensis strain HN-Q-8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458938..3469627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GG619_RS16815 (GG619_16815) fliW 3459029..3459460 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  GG619_RS16820 (GG619_16820) - 3459490..3460059 (-) 570 WP_033575224.1 DUF6470 family protein -
  GG619_RS16825 (GG619_16825) flgL 3460150..3461067 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  GG619_RS16830 (GG619_16830) flgK 3461079..3462596 (-) 1518 WP_033575223.1 flagellar hook-associated protein FlgK -
  GG619_RS16835 (GG619_16835) - 3462612..3463094 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GG619_RS16840 (GG619_16840) flgM 3463109..3463375 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GG619_RS16845 (GG619_16845) - 3463445..3463864 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  GG619_RS16850 (GG619_16850) comFC 3463938..3464627 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  GG619_RS16855 (GG619_16855) - 3464633..3464917 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  GG619_RS16860 (GG619_16860) comFA 3464975..3466360 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  GG619_RS16865 (GG619_16865) - 3466468..3467316 (-) 849 WP_015418336.1 DegV family protein -
  GG619_RS16870 (GG619_16870) degU 3467414..3468103 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GG619_RS16875 (GG619_16875) degS 3468180..3469343 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25270.84 Da        Isoelectric Point: 8.0838

>NTDB_id=396254 GG619_RS16850 WP_197093073.1 3463938..3464627(-) (comFC) [Bacillus velezensis strain HN-Q-8]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKHFLLRQNRSVY
LYNDAMKDSLARFKFRGDTKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=396254 GG619_RS16850 WP_197093073.1 3463938..3464627(-) (comFC) [Bacillus velezensis strain HN-Q-8]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCGATTTGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCCAAAACGGAAAAGCACTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATACGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment