Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GHB96_RS08575 Genome accession   NZ_CP045707
Coordinates   1659003..1659398 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG250     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1653292..1665217 1659003..1659398 within 0


Gene organization within MGE regions


Location: 1653292..1665217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB96_RS12135 - 1653292..1653966 (-) 675 WP_284039019.1 hypothetical protein -
  GHB96_RS08530 (GHB96_09025) - 1654306..1654551 (-) 246 WP_003689849.1 hypothetical protein -
  GHB96_RS08535 (GHB96_09035) - 1654663..1655091 (+) 429 WP_020997399.1 CopD family protein -
  GHB96_RS08540 (GHB96_09040) - 1655103..1655579 (+) 477 WP_003689851.1 CYTH domain-containing protein -
  GHB96_RS08545 (GHB96_09045) - 1655609..1656097 (-) 489 WP_047920276.1 dihydrofolate reductase -
  GHB96_RS08550 (GHB96_09050) aroG 1656165..1657220 (-) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  GHB96_RS08555 (GHB96_09055) - 1657382..1657609 (-) 228 WP_153707886.1 hypothetical protein -
  GHB96_RS08565 (GHB96_09060) - 1657837..1658133 (+) 297 WP_003689859.1 hypothetical protein -
  GHB96_RS08570 (GHB96_09065) - 1658130..1658369 (+) 240 WP_003689861.1 membrane protein -
  GHB96_RS12265 - 1658922..1659069 (+) 148 Protein_1688 peptidase -
  GHB96_RS08575 (GHB96_09070) comE 1659003..1659398 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  GHB96_RS12000 (GHB96_09075) - 1659500..1659619 (-) 120 Protein_1690 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=396175 GHB96_RS08575 WP_003703428.1 1659003..1659398(-) (comE) [Neisseria gonorrhoeae strain NG250]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=396175 GHB96_RS08575 WP_003703428.1 1659003..1659398(-) (comE) [Neisseria gonorrhoeae strain NG250]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment