Detailed information NTG0396106

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GFU70_RS20120
• Genome accession: NZ_CP045701
• Coordinates: 4720621..4722867 (-)
• Length: 748 a.a.
• NCBI ID: WP_064106986.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum strain S-1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4715621..4727867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFU70_RS20085 (GFU70_20090)	murB	4716005..4717024 (-)	1020	WP_058544673.1	UDP-N-acetylmuramate dehydrogenase	-
GFU70_RS20090 (GFU70_20095)	-	4717021..4717485 (-)	465	WP_153388710.1	low molecular weight protein-tyrosine-phosphatase	-
GFU70_RS20095 (GFU70_20100)	kdsB	4717485..4718249 (-)	765	WP_116641554.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GFU70_RS20100 (GFU70_20105)	-	4718246..4718431 (-)	186	WP_003179363.1	Trm112 family protein	-
GFU70_RS20105 (GFU70_20110)	lpxK	4718455..4719465 (-)	1011	WP_153388711.1	tetraacyldisaccharide 4'-kinase	-
GFU70_RS20110 (GFU70_20115)	-	4719465..4719893 (-)	429	WP_058544677.1	ExbD/TolR family protein	-
GFU70_RS20115 (GFU70_20120)	exbB	4719890..4720525 (-)	636	WP_058544678.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GFU70_RS20120 (GFU70_20125)	comA	4720621..4722867 (-)	2247	WP_064106986.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GFU70_RS20125 (GFU70_20130)	-	4723012..4723527 (+)	516	WP_058542363.1	DUF2062 domain-containing protein	-
GFU70_RS20130 (GFU70_20135)	-	4723615..4724394 (-)	780	WP_058542366.1	ABC transporter permease	-
GFU70_RS20135 (GFU70_20140)	-	4724397..4725329 (-)	933	WP_116641551.1	ABC transporter ATP-binding protein	-
GFU70_RS20140 (GFU70_20145)	-	4725465..4726088 (-)	624	WP_058542365.1	glutathione S-transferase family protein	-
GFU70_RS20145 (GFU70_20150)	-	4726133..4726792 (-)	660	WP_116641550.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81158.39 Da
• Isoelectric Point: 9.6851

>NTDB_id=396106 GFU70_RS20120 WP_064106986.1 4720621..4722867(-) (comA) [Pseudomonas brassicacearum strain S-1]
MRTGLVALALGLLAPIFLPVLPPLWLIAAMPVLALMALPFRTYPLGFFLFGLAWACLSAQCALDERLPIALDGETRWVEG
RVVGLPQQGEGVVRFELADAHSRRTRLPATMRLAWFGGPPVSSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGVGATG
TIKDGRLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACALAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRWRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPLMGESLLWIAGGLLDLLFKGLTLVAGRMPAWVPTAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGQAEIWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
RAVRNGLPTMEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVIARYRRSGLAIYDSAEQGAIRLQL
GAFEVPRAEARHRRYWRDSPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=396106 GFU70_RS20120 WP_064106986.1 4720621..4722867(-) (comA) [Pseudomonas brassicacearum strain S-1]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGTACTGCCGCCGTTGTGGCTGAT
TGCTGCCATGCCGGTGCTGGCATTGATGGCGTTGCCGTTTCGAACCTATCCACTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGTGCGCTGGACGAACGGTTACCCATCGCGCTCGACGGCGAAACCCGCTGGGTCGAGGGG
CGGGTGGTCGGTTTGCCGCAACAGGGCGAAGGCGTGGTGCGCTTCGAACTGGCCGATGCCCACTCACGTCGTACCCGACT
ACCGGCGACGATGCGCCTTGCCTGGTTCGGTGGTCCGCCGGTCAGCAGCGGCGAACGATGGCGATTGGCGGTGAAGCTCA
AGCGGCCCTCCGGGCTGTTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGCTGAGCCGCGGCGTCGGCGCGACCGGT
ACGATCAAGGATGGCCGTCTCCTGCAAGCGGCCCGGGGGGCCTGGCGCGATGAGGTGCGCCAGGCGCTGGCACAGGTCGA
TGCCCACGGTCGCTCCGGTGCGCTGGCGGCTCTGGTCCTGGGCGACGGGGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATTGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGTGCGGCGCGTTATGGCCTGTGGCCGGTGGGGCTGGCCTGGTTGCCTTGGGCTTGTGCGTTGGCCTTCTGCGC
CGCTCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGACGGGCCTGCGCGATGATCGGCCTGGTGTTGCTGT
GGCGCTGGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTCGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAGACCTGGACCCGTGCCCAGTGGCTGGTTGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGCT
TGCCGGTCAGCCTCAGCGGGCCATTGGTGAACCTGCTCGCGGTGCCTTGGATCAGCCTGTTGGTATTGCCGCCAGCGCTG
CTTGGCACGGCGTTGTTGCCGGTGCCGCTCATGGGCGAAAGTCTGCTGTGGATCGCCGGAGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGACGCTGGTTGCCGGACGAATGCCGGCCTGGGTCCCGACTGCAGTCCCGCCCTGGGCCTTGGGTATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTGCGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCAAGCCGAGATCTGGCAATTGGACGTGGGCCAAGGGTTGGCGGTGTTGGT
GCGGACTCGGCGGCACACCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGTGGGCGAGCGCGTCGTGCTGC
CGACCTTGCGCAAATTGGGTGTGCGCGGCTTGGACCTGATGTTGCTCAGCCATGCCGACGCCGATCATGCTGGCGGTGCC
CGTGCCGTGCGCAATGGGTTGCCAACGATGGAAGTGATCAGCGGCGATCCTGACGCGCTGCCCGCCGAGCTGCTGGCCGG
GCCTTGTGACAGTGGCAGGCGCTGGGAATGGGACGGGGTCGGGTTCGAGCTGTGGCGGTGGGCCTCTGCTGTCGAGAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTCGAGGCCGGCGGCGAGCGCCTGCTGCTGACCGGCGATATCGACACCCCTGCCGAG
CGCGCTTTGCTCGACGAGGCCCTGGCGGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGCCGCAGTTCGTCGTC
GATGGCGTTGCTGTCACGTCTCAAGCCGCATTCGGTATTGATCTCCCGAGGGCAGGGCAACGCGTTCGGCCACCCTCATC
CCCAGGTGATCGCCCGGTATCGACGCTCGGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAATTG
GGGGCTTTCGAGGTGCCGCGCGCCGAGGCCAGGCACCGACGTTATTGGCGTGATTCGCCCGCAGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.088	95.856	0.586