Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GFU70_RS20115 Genome accession   NZ_CP045701
Coordinates   4719890..4720525 (-) Length   211 a.a.
NCBI ID   WP_058544678.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain S-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4714890..4725525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFU70_RS20080 (GFU70_20085) - 4715271..4715741 (-) 471 WP_058544672.1 (2Fe-2S)-binding protein -
  GFU70_RS20085 (GFU70_20090) murB 4716005..4717024 (-) 1020 WP_058544673.1 UDP-N-acetylmuramate dehydrogenase -
  GFU70_RS20090 (GFU70_20095) - 4717021..4717485 (-) 465 WP_153388710.1 low molecular weight protein-tyrosine-phosphatase -
  GFU70_RS20095 (GFU70_20100) kdsB 4717485..4718249 (-) 765 WP_116641554.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GFU70_RS20100 (GFU70_20105) - 4718246..4718431 (-) 186 WP_003179363.1 Trm112 family protein -
  GFU70_RS20105 (GFU70_20110) lpxK 4718455..4719465 (-) 1011 WP_153388711.1 tetraacyldisaccharide 4'-kinase -
  GFU70_RS20110 (GFU70_20115) - 4719465..4719893 (-) 429 WP_058544677.1 ExbD/TolR family protein -
  GFU70_RS20115 (GFU70_20120) exbB 4719890..4720525 (-) 636 WP_058544678.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GFU70_RS20120 (GFU70_20125) comA 4720621..4722867 (-) 2247 WP_064106986.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GFU70_RS20125 (GFU70_20130) - 4723012..4723527 (+) 516 WP_058542363.1 DUF2062 domain-containing protein -
  GFU70_RS20130 (GFU70_20135) - 4723615..4724394 (-) 780 WP_058542366.1 ABC transporter permease -
  GFU70_RS20135 (GFU70_20140) - 4724397..4725329 (-) 933 WP_116641551.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.98 Da        Isoelectric Point: 8.0840

>NTDB_id=396105 GFU70_RS20115 WP_058544678.1 4719890..4720525(-) (exbB) [Pseudomonas brassicacearum strain S-1]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=396105 GFU70_RS20115 WP_058544678.1 4719890..4720525(-) (exbB) [Pseudomonas brassicacearum strain S-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGTGCCAGCTCGCCGCTGGGGGAGGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCTGCCCGGGTCATCCATGAACTGGAGCGCTATAT
CAGCACCCTGGGGACCATCGCCGCCATGTCCCCCCTGTTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCACCGGCTCCGGCATGACCACTAACGCCGCAGTACTGGCGGGGGGCATTTCCAAAGCCTTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCACCGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839

Multiple sequence alignment