Detailed information NTG0396085

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GFB47_RS09300
• Genome accession: NZ_CP045699
• Coordinates: 2041601..2044993 (+)
• Length: 1130 a.a.
• NCBI ID: WP_153447734.1
• Uniprot ID: A0A5Q0TKF9
• Organism: Vibrio algicola strain SM1977
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2036601..2049993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFB47_RS09285 (GFB47_09270)	hemL	2037180..2038475 (+)	1296	WP_153447731.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GFB47_RS09290 (GFB47_09275)	-	2038981..2040066 (+)	1086	WP_153447732.1	AI-2E family transporter	-
GFB47_RS09295 (GFB47_09280)	rsmC	2040231..2041262 (+)	1032	WP_153447733.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GFB47_RS09300 (GFB47_09285)	chiS	2041601..2044993 (+)	3393	WP_153447734.1	response regulator	Regulator
GFB47_RS09305 (GFB47_09290)	-	2046056..2047738 (+)	1683	WP_153447735.1	ABC transporter substrate-binding protein	-
GFB47_RS09310 (GFB47_09295)	-	2047902..2048888 (+)	987	WP_153447736.1	ABC transporter permease	-
GFB47_RS09315 (GFB47_09300)	-	2048891..2049916 (+)	1026	WP_153447737.1	ABC transporter permease	-

Sequence

Protein

• Length: 1130 a.a.
• Molecular weight: 126910.18 Da
• Isoelectric Point: 7.5730

>NTDB_id=396085 GFB47_RS09300 WP_153447734.1 2041601..2044993(+) (chiS) [Vibrio algicola strain SM1977]
MFKSKKSNKFQKLQHTLMVAFLVLSITPFTIIAVFFLHSHTQDLQEQSTSYLLSVRDTKKQQVNSYLKAKESEVMGVVRS
ELAYSSGGRFYGLINGFTMLGDNIEQARKNAQQRYILGSGNKIKTAVLPESPNFIGSERYRLLHKRYHWAFVELLKRSDF
SDILLVDRNGNVAYSVKKDADYGTNLLSGPYQKTPLGQTFAKLRNTVKASRKNNEDYTPVIFSDFNKDKSKQTLWLGAPI
IQQGYLHSYAMFKLPNTALSNMINAHSKKESLTKLLVGQHKHSKVLDLSQKSIDASSLVIDKALAGHSAVESFTDTNGEK
LLAAYTPIHIKDKTWALVVQLPEKQAYARVHQLKNIFAIVMVIGIILVVVCSHYLSNFITAPLLKLAWAAERVSAGDLDQ
ELEVLKRKDEIGRLSVSFIRMQRSIREKILLIGDQNKILENNIQTIKQKNDDLELANKLKDEFLATTSHELRTPLHGMVG
IAESLISGANGPLPANQRHQLDIIINSGQRLTTLVDDLLDYHKMRYGNLDIQTTTVDVASATRLVLELSQHLLGSKPIRI
INQIPLELPLIAADAQRLEQVLYNLIGNAIKYTSEGKIIISATVLDNNIRMQVVDTGQGIPADQLDHIFEPLIQAGQDSS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPLVGTTFSFSLPIASEQQIAEHKYQAPNEHFQAPESNAPLTDLDSSSLPVN
SDGPLLVVADDEPVNLRILDSFLRLEGYRVKTAADGLSALQLIEKEKPELALLDVMMPGMSGYEACEEIRQQYDHGELPV
ILLTALSQSKDRVRGFEAGANDYLTKPFNKQELAARIKAHLTASKAEQRRIENSKLQQELRIREQVEASLLETQGRLLEQ
LESAPEAIVCVREDGRIRFANDSAAKLFKRSPEQLKRSTADEIIAPKYLNLTQEHFCGDADIFIEDKRVHIQSDVLTLPQ
ASGLQSMYIFNIGGGVNAQRIDNLETAIEALSSYAFEGDKNKLQQLKELGGEFTRLADKVSHKSEDKQQIMRDILVDTMT
TALDYWESATGQTKYTLAEESGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNTIDYILEHSNANTPQRQHLIEC
REKLQLLLVS

Nucleotide

• Length: 3393 bp

>NTDB_id=396085 GFB47_RS09300 WP_153447734.1 2041601..2044993(+) (chiS) [Vibrio algicola strain SM1977]
ATGTTTAAATCAAAAAAATCCAATAAATTCCAAAAGCTTCAGCACACCTTGATGGTCGCGTTTCTGGTGCTAAGTATTAC
GCCTTTTACTATTATTGCGGTTTTTTTCTTACACTCTCACACCCAAGATTTGCAAGAACAAAGTACCTCTTATTTGCTCT
CCGTTCGTGATACTAAAAAGCAACAGGTTAATAGTTATCTCAAAGCGAAAGAATCGGAAGTGATGGGGGTGGTTCGCTCT
GAATTAGCCTATTCAAGTGGCGGACGTTTTTATGGCTTAATCAACGGTTTCACCATGCTCGGTGACAATATAGAGCAAGC
TAGAAAAAATGCTCAACAACGTTATATTTTAGGTTCAGGCAATAAAATCAAAACTGCGGTCCTCCCAGAGTCGCCTAATT
TTATCGGCAGCGAGCGCTATCGTCTGCTGCATAAACGCTACCATTGGGCATTTGTCGAACTGCTTAAACGCTCTGATTTC
AGCGATATATTATTAGTTGATCGCAATGGTAACGTAGCTTACTCAGTCAAAAAAGACGCGGATTATGGCACCAACTTATT
AAGCGGCCCTTATCAAAAAACTCCGCTCGGCCAAACTTTCGCTAAGTTAAGAAATACCGTCAAAGCCTCACGTAAAAATA
ATGAAGATTACACCCCCGTTATTTTCTCTGATTTTAATAAAGACAAATCCAAGCAAACTTTGTGGTTAGGGGCGCCTATC
ATTCAGCAAGGGTACTTACACAGTTATGCAATGTTTAAACTGCCCAATACCGCTTTATCAAATATGATCAACGCGCATAG
TAAAAAAGAATCGTTAACCAAATTATTAGTCGGCCAGCATAAACATTCAAAAGTACTCGATTTATCTCAAAAAAGTATCG
ATGCCAGTAGCTTGGTTATCGATAAAGCATTAGCCGGTCATTCTGCGGTTGAATCATTTACCGATACCAATGGTGAAAAA
CTTCTAGCCGCTTACACCCCTATTCATATAAAAGATAAAACTTGGGCGCTAGTAGTTCAATTACCTGAAAAACAAGCTTA
TGCCCGAGTTCACCAATTAAAAAATATCTTCGCAATTGTGATGGTAATAGGCATTATTTTAGTGGTGGTGTGCTCTCATT
ATTTATCTAACTTTATTACCGCACCATTATTAAAACTTGCGTGGGCAGCAGAGCGAGTGTCCGCCGGCGATCTCGATCAA
GAGCTTGAAGTATTAAAACGCAAAGATGAAATTGGCCGCTTATCGGTTAGTTTTATCCGTATGCAACGCTCGATCAGAGA
AAAGATCTTATTGATCGGCGATCAAAATAAAATTCTCGAAAATAATATTCAAACCATCAAGCAAAAAAATGATGATTTGG
AACTGGCCAATAAGCTGAAAGATGAGTTTTTGGCCACGACTTCTCATGAATTAAGAACCCCATTGCACGGTATGGTCGGC
ATTGCGGAATCGTTGATCTCTGGTGCGAATGGCCCATTGCCAGCCAATCAAAGGCATCAACTCGATATTATCATTAATAG
CGGTCAACGCCTAACCACTTTGGTCGATGACCTACTCGACTACCATAAAATGCGTTATGGCAATTTAGACATTCAAACCA
CTACAGTGGACGTTGCGTCGGCCACTCGCTTAGTATTGGAATTATCTCAACATCTACTTGGCAGTAAACCGATCCGCATT
ATTAACCAAATTCCATTAGAGCTGCCGTTAATCGCCGCCGATGCTCAACGCTTAGAGCAAGTGCTGTATAACTTAATTGG
TAATGCGATCAAATACACCAGTGAAGGCAAGATCATTATCTCGGCCACGGTGCTAGATAATAATATTCGCATGCAAGTGG
TGGATACCGGCCAAGGGATCCCCGCCGATCAACTTGACCACATCTTCGAGCCGCTTATCCAAGCTGGACAAGATTCGAGT
CGTTATCGTCAAGGGGCAGGTTTAGGCTTGTCAATTAGTCGCCAATTAATTGAACTGATGGGGGGATCGCTGTATGTCAG
TAGTCAGCCGCTGGTCGGCACCACGTTTAGCTTCTCATTACCAATAGCCAGTGAGCAACAAATCGCTGAGCATAAATACC
AAGCGCCAAATGAGCATTTTCAAGCTCCAGAAAGTAATGCCCCGCTCACTGATCTTGATTCCTCATCATTGCCAGTAAAT
AGCGATGGTCCATTATTGGTGGTAGCTGATGATGAACCGGTGAACTTACGCATTTTAGACAGTTTCTTACGTTTAGAAGG
CTACCGAGTGAAAACCGCAGCCGATGGTTTAAGTGCGCTGCAATTAATTGAGAAAGAGAAACCAGAATTAGCCTTACTGG
ATGTAATGATGCCAGGCATGAGTGGTTATGAAGCCTGTGAAGAAATCCGCCAACAATATGATCATGGTGAACTGCCGGTT
ATCTTACTGACAGCACTAAGCCAAAGCAAAGATCGGGTACGAGGCTTTGAAGCGGGGGCGAACGACTACTTAACTAAACC
ATTTAATAAACAAGAACTGGCGGCGCGGATTAAAGCTCACTTAACCGCCAGTAAGGCCGAACAACGCCGGATAGAAAATA
GCAAATTACAACAAGAGCTACGCATTAGAGAACAAGTTGAAGCCAGCCTACTGGAAACTCAAGGTCGCTTATTAGAGCAA
TTAGAGTCGGCGCCAGAAGCGATTGTTTGCGTGCGTGAAGATGGTCGAATTCGTTTTGCCAATGATTCGGCGGCTAAATT
ATTTAAGCGCAGCCCCGAGCAACTCAAGCGCTCTACCGCCGATGAGATTATCGCACCGAAATACCTGAATTTAACCCAAG
AGCATTTTTGTGGCGATGCGGATATTTTCATTGAAGATAAGCGAGTGCACATCCAAAGTGACGTGTTAACGCTACCGCAA
GCTTCAGGCCTACAATCTATGTATATCTTTAATATTGGCGGCGGCGTTAATGCGCAGCGAATTGATAACTTAGAAACCGC
CATCGAAGCACTGTCGAGTTATGCGTTTGAAGGCGATAAAAACAAACTACAGCAACTTAAAGAGCTGGGCGGTGAATTTA
CTCGCTTAGCCGATAAAGTGTCGCATAAGAGCGAAGATAAACAGCAAATTATGCGTGATATTTTAGTCGATACAATGACT
ACCGCGCTCGATTATTGGGAATCGGCAACGGGCCAAACTAAATACACCTTAGCCGAGGAAAGTGGCTTGTGGCGCGTCTA
TCTCGACCGTAGCACCCTACAAACCCGCACCTTAGATAAATATCTACGGATTGAAACCCTGCCTAAAACACCACGTTGGC
GCACCGTACTCAATACCATTGATTACATCCTAGAACACAGCAACGCCAATACCCCACAGCGCCAGCATTTGATTGAGTGT
CGTGAAAAGCTGCAACTATTGTTGGTGAGTTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (727-838)

• PAS fold (PAS) (878-918)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

3D structure

• AlphaFold DB: A0A5Q0TKF9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	68.695	100	0.689