Detailed information NTG0396083

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GFB47_RS08490
• Genome accession: NZ_CP045699
• Coordinates: 1855074..1856039 (-)
• Length: 321 a.a.
• NCBI ID: WP_153447592.1
• Uniprot ID: -
• Organism: Vibrio algicola strain SM1977
• Function: regulation of chitinases (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1849798..1854788	1855074..1856039	flank	286

Gene organization within MGE regions

Location: 1849798..1856039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFB47_RS08475 (GFB47_08460)	-	1849798..1850718 (+)	921	WP_153447589.1	IS5 family transposase	-
GFB47_RS08480 (GFB47_08465)	mutS	1850901..1853495 (+)	2595	WP_153447590.1	DNA mismatch repair protein MutS	-
GFB47_RS08485 (GFB47_08470)	-	1853868..1854788 (+)	921	WP_153447591.1	IS5 family transposase	-
GFB47_RS08490 (GFB47_08475)	rpoS	1855074..1856039 (-)	966	WP_153447592.1	RNA polymerase sigma factor RpoS	Regulator

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36823.99 Da
• Isoelectric Point: 5.6320

>NTDB_id=396083 GFB47_RS08490 WP_153447592.1 1855074..1856039(-) (rpoS) [Vibrio algicola strain SM1977]
MSISNAAVKTNDIDNRKFDVKAVEAKTRKEEKKGEYEVSAKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDAAARK
RMIESNLRLVVKISRRYNSRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV
KELNIYLRTARELAQKLDHEPTAEEIAETLDKPVGDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDIHNSDPEVSTQD
DDIRNSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNMESLFNVEN
D

Nucleotide

• Length: 966 bp

>NTDB_id=396083 GFB47_RS08490 WP_153447592.1 1855074..1856039(-) (rpoS) [Vibrio algicola strain SM1977]
ATGAGTATCAGCAATGCAGCAGTTAAAACCAACGACATCGATAATAGAAAATTTGATGTTAAAGCAGTAGAAGCCAAAAC
TCGCAAGGAAGAGAAAAAAGGCGAGTATGAAGTCTCGGCCAAAAACCTTGATGCCACTCAACTTTACTTAGGTGAAATCG
GCTTTTCTCCTCTACTGACCGCAGAAGAAGAAGTGCTTTATGCACGCCGAGCTTTACGTGGTGATGCCGCAGCTCGTAAA
CGTATGATTGAAAGTAATCTGCGTTTAGTGGTTAAGATTTCTCGTCGTTATAATAGCCGTGGTTTAGCGTTACTCGATTT
AATCGAAGAGGGAAACCTTGGCCTTATCCGCGCGGTCGAAAAATTTGACCCAGAAAGAGGTTTTCGCTTCTCGACTTATG
CGACCTGGTGGATCAGACAAACCATCGAACGGGCGTTAATGAATCAAACCCGTACCATTCGGTTGCCAATTCATGTGGTT
AAAGAGTTGAATATCTACTTGCGTACTGCGCGTGAACTGGCGCAAAAACTCGATCATGAACCAACCGCAGAAGAAATTGC
AGAAACGTTGGATAAGCCAGTGGGTGATGTGTCAAAAATGCTGCGCTTGAATGAGCGTATCAGCTCTGTCGATACCCCAA
TTGGTGGCGATGGTGAAAAAGCCCTGCTAGATATTATCCCTGATATCCATAATTCAGATCCGGAAGTGTCTACTCAAGAT
GATGATATTCGAAATTCATTAATCAATTGGTTAGATGAACTCAACCCAAAACAAAAAGAAGTATTAGCGCGCCGCTTTGG
ACTTTTAGGCTATGAGCCCTCCACTTTAGAAGAAGTTGGTCGTGAAATTAATCTAACTCGTGAACGTGTGCGTCAAATCC
AAGTTGAAGGCTTACGTCGCTTAAGAGAGATCTTAATGAAACAAGGCTTGAATATGGAGTCATTGTTTAACGTTGAAAAT
GATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (162-235)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (44-76)

• Sigma-70 region 2 (Sigma70_r2) (82-151)

• Sigma-70, region 4 (Sigma70_r4) (250-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	80.539	100	0.838